BAC Information

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BAC

Clone NameMSMg01-274C09
Chromosome7 (Build37)
Map Location 150,435,791 - 150,436,419
singlet/doubletsinglet
Overlap geneKcnq1
Upstream geneLOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
Downstream geneCdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C09.T7 (MSMg01no274_c09.b1)MSMg01-274C09.TJ (MSMg01no274_c09.g1)
ACCAG412960AG412961
length741737
length of high quality
(start - end)		686 (56 - 741)667 (71 - 737)
definitionCHROMAT_FILE: MSMg01no274_c09.b1 PHD_FILE: MSMg01no274_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:39 2005CHROMAT_FILE: MSMg01no274_c09.g1 PHD_FILE: MSMg01no274_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXGTTCACTAAATAGACCACTTTCTTGGGAAGTAGCTGGCACAAGTT
TCCTGTTATTCTCTGCCCATAAATCTAGCCCCAAAAAAGTGATAGGAAGG
GGTTAAAGCCTTTAAGAATGAAAGTAGCATGATGCACTTTTTATCAAAAG
AATTTTTGGGATTGCTATGTATAGGATGTAGCAAAGGAAAGCCAGGGAGA
CTTGGGAGGCCAGTGAAGAGTGAAAGGGACATCCAAACAAACAAACAGAC
AAACAGACAAACCCCTAAACAAACATGGTGGCATTAGCAGGGGAAGAAGC
TATAGAGACCAAGAGTGGGAAAAGTCTATATGTGAAAAAGCATAATTTTA
AAGATTTGCAGGAATGTTTGGAGAATAACAACATTCTACTCCCCCACCCC
AACCCCTGGACTTCAAATCTTCTCACTTACTCAAAAAATCAGAACAAGCA
ATTCAACAACAGTAAGAGCAAAATAAAACCATATATGATCTATTCCTTCA
ACAGTAGGCCAAATACATAGAAATTACCCATGAGAGGAGAGTCTGCCCAC
CATTGTATACCTGTGAGTGCAAAAGAAGAGGCCTACGATGCTCTGTCAAA
AGAGTGAGGATGCTAAGTAGTGTCAACAAAAATAAGGTTCCCCTCTCCAC
AGAAATATTTTTATAGGAACTCAGAATTAATGTCAGTGATT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGCTCTCTCCAAGAATTTTAATATCAAAG
GCTTTTTCAGCATCTCATGAGATAATCATGTTTTTTTCTGTTTGTGTATA
TGGTGGATGATGTTTATGGATTTTCATATATTGAACCATTCCTGAAGCCC
TGGGATGAAGCCTACTTGATCCTGGTAAATGATGGCTTTGATATGTTTAT
GGATTGAATTTGCAAGAATTTTATTGTGTATTTTTGTGTCAATATTCAAA
AGCAAAGCTGGTCTGAAGTTTTGTTGGGTCTTTGTGTGATTTAGGTGTCA
GAGTAACTGTGCCTTCGCAGAATGAATTAGGTAGTGTTCCTTCTGTTTCT
ATTGTGTGGGATAGTTTGAGTATTAGTATTAGCTCATTTTTTAATGTTGG
TAGAATTCTGCACTAAAACCCTCTGGCGCTCGGCTGTTGTTTTTTTTTGT
AGTTTGTTTGTTTGGTTTTTGTTTGTTTGTTTGTTCTTGTTTTAGTTTGC
CTGATCTTGATTTAACTTTAGTACATGGTATCTGTCTGGAAAGCCAACCA
TTTCATCTAGATTTTCCAGTTTTGTTAAGTCTCTTGTAGTAAGATCTAAT
GTTTTTTTCAATTTCCTCAATGTCTCGCTTTACATTTTTGATTTTGTTAA
ACTGAATACTGGCTCTGTTCCCTTTAGATAGTTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c09.b1 MSMg01no274_c09.b1 CHROMAT_FILE:
MSMg01no274_c09.b1 PHD_FILE: MSMg01no274_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:39 2005
         (686 letters)



>mm_chr7_150435334_150436419
          Length = 1086

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/633 (98%), Gaps = 4/633 (0%)
 Strand = Plus / Minus

                                                                        
Query: 54   ttctctgcccataaatctagccccaaaaaagtgataggaaggggttaaagcctttaagaa 113
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ttctctgtccataaatctagccccaaaaaagtgataggaaggggttaaagcctttaagaa 1027

                                                                        
Query: 114  tgaaagtagcatgatgcactttttatcaaaagaatttttgggattgctatgtataggatg 173
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1026 tgaaagtagcatgatgcactttttatcgaaagaatttttgggattgctatgtataggatg 967

                                                                        
Query: 174  tagcaaaggaaagccagggagacttgggaggccagtgaagagtgaaagggacatccaaac 233
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 966  tagcaaaggaaagccagggagacttgggaggccagtgaagagtgaaagggacatc----c 911

                                                                        
Query: 234  aaacaaacagacaaacagacaaacccctaaacaaacatggtggcattagcaggggaagaa 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  aaacaaacagacaaacagacaaacccctaaacaaacatggtggcattagcaggggaagaa 851

                                                                        
Query: 294  gctatagagaccaagagtgggaaaagtctatatgtgaaaaagcataattttaaagatttg 353
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  gctatagaaaccaagagtgggaaaagtctatatgtgaaaaagcataattttaaagatttg 791

                                                                        
Query: 354  caggaatgtttggagaataacaacattctactcccccaccccaacccctggacttcaaat 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  caggaatgtttggagaataacaacattctactcccccaccccaacccctggacttcaaat 731

                                                                        
Query: 414  cttctcacttactcaaaaaatcagaacaagcaattcaacaacagtaagagcaaaataaaa 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  cttctcacttactcaaaaaatcagaacaagcaattcaacaacagtaagagcaaaataaaa 671

                                                                        
Query: 474  ccatatatgatctattccttcaacagtaggccaaatacatagaaattacccatgagagga 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  ccatatatgatctattccttcaacagtaggccaaatacatagaaattacccatgagagga 611

                                                                        
Query: 534  gagtctgcccaccattgtatacctgtgagtgcaaaagaagaggcctacgatgctctgtca 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  gagtctgcccaccattgtatacctgtgagtgcaaaagaagaggcctacgatgctctgtca 551

                                                                        
Query: 594  aaagagtgaggatgctaagtagtgtcaacaaaaataaggttcccctctccacagaaatat 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  aaagagtgaggatgctaagtagtgtcaacaaaaataaggttcccctctccacagaaatat 491

                                             
Query: 654  ttttataggaactcagaattaatgtcagtgatt 686
            |||||||||||||||||||||||||||||||||
Sbjct: 490  ttttataggaactcagaattaatgtcagtgatt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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