BAC Information

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BAC

Clone NameMSMg01-277C05
Chromosome7 (Build37)
Map Location 50,857,388 - 50,857,626
singlet/doubletsinglet
Overlap genenone
Upstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C05.T7 (MSMg01no277_c05.b1)MSMg01-277C05.TJ (MSMg01no277_c05.g1)
ACCAG415124AG415125
length757769
length of high quality
(start - end)
239 (130 - 368)305 (78 - 382)
definitionCHROMAT_FILE: MSMg01no277_c05.b1 PHD_FILE: MSMg01no277_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:13 2005CHROMAT_FILE: MSMg01no277_c05.g1 PHD_FILE: MSMg01no277_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCCACAAAAGCTTTCATGAAACAAACCTCGCACAAGAGATTTATTGG
GGAGAAACCCAGAATGGGATTTGCCCCTGAATGAAAAGAAACGTCAGGAT
CTTTGAAGCAGTGAGCTCATTGAAAAGCACAGTGCTTATCTGTTAATCCT
GAAATATTGCTTGGCCATTATCGCTTAGTCATGGGGGTTGGGATTTCTAA
GTCTTGGAGTTCAGGGTCAAGCCACAAGCAGGGGGATTTTCCACTGGCCA
TTTCACCCTACATTCTTTCCTTTTTGTTTACTATTGATAACTAATCAGGG
GTCGGGAAAGAGGATGATTTCTTCATTACACTGCTTCCTGCTGTATGGGG
GTGAATCCATAGGGGCAAGTGTTTTTGATGTTAAATAAGTTCTTCTGTGA
GGGGCTGCAAACAAGGAGTGAATCAGCACTTGGGTGATTTCCTGTAAACC
TTCTTCCTGCCTTAATTTATAAATAAAGGCTAGAGCCGGTGATTGGGGGA
TAAAGAGGGGAAGGTGGAGCTGAAGATCTTGGGAGAAAAGGAGAGGGGGA
GGATGACTGGGGAGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTNNNTNNNNNNGNNNNNNNGNNNNGNNNNN
NNNNNNNTNNNNNNNNNNNNNNNNNNGNNNNNGGGNGGTTNNGGGTTTTT
TGTGTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATACCCAGTACCAAGGTAAAAA
CAAACAAAACAAACAAAACACAAAATAATCTCTATGATCTGTTGGGTTGG
TGACTCCACCTGGCGCGTGCGCGCGCGCGCGCGCGCGCACACACACACAC
ACACATTGCTATACATAGTTACCGTTGATGATGAGAATACTTGAAATCAC
CTTCTAACTTTCCCAATAACGCATTGCCTGGGTAGTAGCTAAAGTGGTCA
TGTTGTACAATGAAGTTCTTAAGGTTTTTTCCCTCTAACTTTAAAAAAAT
TATTTAAAGATATTAAAATTTATTTTTAAGTGCTGGCGACTGGATTCATA
TTAGGGTGGGGTGACTTCTCTTTGAGGTTCTTTTTAAAAAAACTATTATT
AGTAGTATTTTGTTTTGTTTTGTTTGGATTTTTAAGATTTGTTTATTTAT
TTTACTCTTTGACTTTCTTATACTGATACTTTCTTATTTTCCTCCAAGTC
CCCAAGTCAGTATTGTCACCTCTCAAAGCTTCAGAGTCTGTCTTGAATTT
GTGGGTGCTGATGGGCTTTGGTTAGGTTTAAGTTTTATGGTCAAGTATTG
TGTGATATTGTGGGACTCCACTGGAATAATACAGCAGAGACATATTTTAG
GCTCTCAATCCAACCTCTGAAGTTTAATTTCAGTTAGGGACACAGTAGAA
CCCCTTTGACAGTAGTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c05.b1 MSMg01no277_c05.b1 CHROMAT_FILE:
MSMg01no277_c05.b1 PHD_FILE: MSMg01no277_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:13 2005
         (239 letters)



>mm_chr7_50857188_50857826
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaaagaaacgtcaggatctttgaagcagtgagctcattgaaaagcacagtgcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaaaagaaacgtcaggatctttgaagcagtgagctcattgaaaagcacagtgcttat 260

                                                                       
Query: 61  ctgttaatcctgaaatattgcttggccattatcgcttagtcatgggggttgggatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttaatcctgaaatattgcttggccattatcgcttagtcatgggggttgggatttcta 320

                                                                       
Query: 121 agtcttggagttcagggtcaagccacaagcagggggattttccactggccatttcaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcttggagttcagggtcaagccacaagcagggggattttccactggccatttcaccct 380

                                                                      
Query: 181 acattctttcctttttgtttactattgataactaatcaggggtcgggaaagaggatgat 239
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattctttccttttcgtttactattgataactaatcaggggtcgggaaagaggatgat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)