BAC Information

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BAC

Clone NameMSMg01-277D10
Chromosome7 (Build37)
Map Location 136,334,115 - 136,334,357
singlet/doubletsinglet
Overlap geneLOC100043144
Upstream geneItgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
Downstream genePpapdc1a, Brwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277D10.T7 (MSMg01no277_d10.b1)MSMg01-277D10.TJ (MSMg01no277_d10.g1)
ACCAG415178AG415179
length739749
length of high quality
(start - end)
243 (441 - 683)667 (78 - 744)
definitionCHROMAT_FILE: MSMg01no277_d10.b1 PHD_FILE: MSMg01no277_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:18 2005CHROMAT_FILE: MSMg01no277_d10.g1 PHD_FILE: MSMg01no277_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACATCTCAACTACAGACACAAAGGCCAGAGAGAGAGAGAGAGAGAGAGAC
AGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAAAGACAGAGAGAG
AGAAACAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGAGACAGAG
AGAGAGACAGAGACACACAGAGACACACAGAGACACACAGAGAGACAGGG
ACCTAGAAACATAGAGACAGAGATACAGAGGCAGAGAGAGACTGAGACAG
ACATCGACATAGAGTTAAAGAGAGACAGGGAGGACTGGAAGTGGTGAGAG
GTTTCTACTAACCCTCCCCGCCTCCAGTGGTGTCCTTTATCTAGATAGGC
CACCCCTCCTAACCTCCTTAAACTTCCCAAACGACATCACCAACCTGGGA
CCTGAGCCTATGGGGGAGATTTCTTATTTAAATGACCACAGGCTCCAACA
TACAGGCCCAGGCACCCAACTTAGCCATGCCATACAGAATGAAGGTCTAA
TGACAGACACCTTAGGTCTAGTCAATAAAGAAAGCCTTCTTCTAGCCAGA
AGCACCTCTTCCTGTCTTCTGCTCCCTGGCCAAGCTGCATATATCACAAT
CTATCAGTAGTCGACTCTCTGGAGCACATTTGAGACTCATACAGAGCAAC
ACTTAAATTTTAATTACGTCCTCTGAGCACCAGATAGAG
ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGAGATTCAAGTGTAGAT
CAGAAGGATCAAGAGACTGAACCACCACATTTAGAGACATCCACTATAGA
TAATAGAGCCCAAAGAATAAAAAGGGAAAAATAAACAAAATTAAACAGAG
ACTCAGAGAAACGTGGGACCTCACATTCAAGAGGAGTAGTTGGCAGGAAA
TAATCTAACTCAGGGCTGAAATCAACCAATTAGAAACAAAGGGAACAATA
GAGTCAGTGAAATCAAGAGCTGGTTCTTTGGGAAAATCAACAAGACAAAC
CCTTAGCCTACTAACTAAAAGGCAGAGACACTATTCAAATTACCAAAATC
AGAATTGAAAGGGGGGACATAAAAATAGACACTGAGGAAATCCAAAGAAT
CATTAGGTCTTACTTCAAAAGCCTGCACTCCACAAAATTGAAAACTCTAA
ATAAAATGGATGATATCCTTGATAGATACCACTTACCAAAGCTAAATCAA
GATCAGGTAAACTATCTAAATAGTCCTATAACCCCTAAAAAAATAAAAGC
TGTCACTAAAAGTCTCCTAAACCAAAAAGCTCAGGGCTAGATGGTTTTAG
CACAGACTTCCAAAGAAGAGCTAATACCAATACTCCTCAAATGATTCCAC
AAAATAGAAATAGAAGGATCATTGTGAAACTCATTTTCTGAGGCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_d10.b1 MSMg01no277_d10.b1 CHROMAT_FILE:
MSMg01no277_d10.b1 PHD_FILE: MSMg01no277_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:18 2005
         (243 letters)



>mm_chr7_136333915_136334557
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacctgggacctgagcctatgggggagatttcttatttaaatgaccacaggctccaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctgggacctgagcctatgggggagatttcttatttaaatgaccacaggctccaaca 260

                                                                       
Query: 61  tacaggcccaggcacccaacttagccatgccatacagaatgaaggtctaatgacagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaggcccaggcacccaacttagccatgccatacagaatgaaggtctaatgacagacac 320

                                                                       
Query: 121 cttaggtctagtcaataaagaaagccttcttctagccagaagcacctcttcctgtcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaggtctagtcaataaagaaagccttcttctagccagaagcacctcttcctgtcttct 380

                                                                       
Query: 181 gctccctggccaagctgcatatatcacaatctatcagtagtcgactctctggagcacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccctggccaagctgcatatatcacaatctatcagtagtcgactctctggagcacatt 440

              
Query: 241 tga 243
           |||
Sbjct: 441 tga 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)