BAC Information

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BAC

Clone NameMSMg01-279E17
Chromosome7 (Build37)
Map Location 126,517,677 - 126,518,206
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
Downstream geneGp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279E17.T7 (MSMg01no279_e17.b1)MSMg01-279E17.TJ (MSMg01no279_e17.g1)
ACCAG416694AG416695
length759758
length of high quality
(start - end)		707 (45 - 751)633 (77 - 709)
definitionCHROMAT_FILE: MSMg01no279_e17.b1 PHD_FILE: MSMg01no279_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:51 2005CHROMAT_FILE: MSMg01no279_e17.g1 PHD_FILE: MSMg01no279_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACTATACTCCCTGTCTATGATTGGCACATTTCACTTAGCCTGT
TTCTCAAGACTCACCTACATTGCACTTTGTGATATGTTTTTATTTCTTTA
TAGCGCGATACCACCTTCCATGTGCACGTATACACAGACACTTTTAGAAT
GTTTCTCTCTGTTGTAAGTTGTAAATAATGGCATTGTGAACACTAAGAAG
AACTGAGTTCAACTTTGTTAAAAAATAACTATTTATCATAATTATGTTTA
TGTGTCTGTGTGTATGTGTTCACATGTGTGTGGGTGCTCACAGGGGCTGG
TAGAGAGTATAGGATCCCCTGGAGCTGGAGCCATGTGATGTGGGTGCTGG
GAGGTGAACTTGGATGCTCAGTGAAAGCAGCAAGACATCTTACCCGATGA
GCCATTCTCCATCTCCCTAGCTTTTAATTGGATTTGTATTTAGAAATGGA
TTTGCTAACGTATGTGCTATTTTTGTGTGTGTGTGTGTGTTTAATTTTGT
TAGAAATTACCATGCTTTTTTTCCCCGTGGAAAATGATGATTTTCACAGA
CCAACTGGCAGCCCACAGGGCCTCCTTTCAAATGTTCTACATCCCCACCC
TTGTTATTTTTAGATGTTCTTGTTGTTGTTGTAAGCTGTCATATCAGATA
CTACATAGCATCTCATCATGGATTTAATGCACGTTGTTTTATGGCTAGTG
ATGTTGGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTGAGTATCAGATTAGGAT
TTGAAGATATAGAGATACAAGGTACTCCTTGAACTTAAAAAGCTCTTAGT
CTTAACAGGAGGGATATATGGGTAGACATTTAATTATAATTGAAATGATG
TATGTTCTTTCTGTGTGTGTATGTGTGCGTACATATATGTGTGATGGGAT
GGCACACGATGGTTACAGGTGAATTTATTAAGCCTATTGAGATCTCCACA
GGGATGACTGGAAGCCTACAGGAGGGTCTGAGAATCAAGGGCTTAGCCAT
AACAAGTGGCACTGTGTGAAGTTACTGCAAGCCTCTAGGAAAGTGATCCC
CACTCCAACACACACACACACACACACACACACACAAGCACACGCCTGGT
GCTTCGGAAGCAAACAGCTGAACCAACCAAAGACAGGACACACTGTTGGT
GTTGACATCCTCAAACTGACAAGCCCGGCCGAAGCAGAGATTCACACCTA
TCATGGAGGAATTTGGCCAAGGTCAATGAGGACTTGAGATCTGCCAGAAA
ACAGTTTATATGCCCCCCTAACCCCACACATTGGTATCACAAACAGGAGA
GAAGAACTTCTGTAGAGCCTGGTTGGATCAAGGGCCAGATACACCTTTGT
GGGTAAAGCCTAGAGATAGGTGTAGTCTGGAGGCCTGGGTTGAAGACACT
CTGAGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_e17.g1 MSMg01no279_e17.g1 CHROMAT_FILE:
MSMg01no279_e17.g1 PHD_FILE: MSMg01no279_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:51 2005
         (633 letters)



>mm_chr7_126517676_126518708
          Length = 1033

 Score =  936 bits (484), Expect = 0.0
 Identities = 521/538 (96%), Gaps = 8/538 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgttgagtatcagattaggatttgaagatatagagatacaaggtactccttgaactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531 ctgtgttgagtatcagattaggatttgaagatatagagatacaaggtagtccttgaactt 472

                                                                       
Query: 61  aaaaagctcttagtcttaacaggagggatatatgggtagacatttaattataattgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaaagctcttagtcttaacaggagggatatatgggtagacatttaattataattgaaat 412

                                                                       
Query: 121 gatgtatgttctttctgtgtgtgtatgtgtgcgtacatatatgtgtgatgggatggcaca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 411 gatgtatgttctttctgtgtgtgtatgtgtgcgtgcatatatgtgtgatgggatggcaca 352

                                                                       
Query: 181 cgatggttacaggtgaatttattaagcctattgagatctccacagggatgactggaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cgatggttacaggtgaatttattaagcctattgagatctccacagggatgactggaagcc 292

                                                                       
Query: 241 tacaggagggtctgagaatcaagggcttagccataacaagtggcactgtgtgaagttact 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 291 tacaggagggtctgagaatcaagggcttagccataacaagtggcactgagtgaagttact 232

                                                                       
Query: 301 gcaagcctctaggaaagtgatccccactccaacacacacacacacacacacacacacaca 360
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||        
Sbjct: 231 gtaagcctctaggaaagtgatccccactccaacacacacacacacacgcaca-------- 180

                                                                       
Query: 361 agcacacgcctggtgcttcggaagcaaacagctgaaccaaccaaagacaggacacactgt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 179 agcacacgcctggtgcttcggaagcaaacagctgaagcaaccaaagacaggacacactgt 120

                                                                       
Query: 421 tggtgttgacatcctcaaactgacaagcccggccgaagcagagattcacacctatcatgg 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tggtgttgagatcctcaaactgacaagcccggccgaagcagagattcacacctatcatgg 60

                                                                     
Query: 481 aggaatttggccaaggtcaatgaggacttgagatctgccagaaaacagtttatatgcc 538
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 59  aggaatttggccaaggtcagtgaggacttgagatctgccagaaaacactttatatgcc 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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