BAC Information

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BAC

Clone NameMSMg01-279H05
Chromosome7 (Build37)
Map Location 96,103,359 - 96,103,647
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H05.T7 (MSMg01no279_h05.b1)MSMg01-279H05.TJ (MSMg01no279_h05.g1)
ACCAG416812AG416813
length751763
length of high quality
(start - end)
471 (62 - 532)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no279_h05.b1 PHD_FILE: MSMg01no279_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005CHROMAT_FILE: MSMg01no279_h05.g1 PHD_FILE: MSMg01no279_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCCT
CTTTGCATGATCTGGGGAGTTCTTTTTCTTCTATGGAGCTCTTGGTTCTT
AAGCCTTCTGACACCGACCAAGTTATACCATCGACTTTCTTTATTTTCTG
ATGTGAAGAAGACATATCATATGACTTCTCACTCTCCTTTATCACATGAG
AGATTTCTATAACATGCTTTCTTTTACATATCTACATAGCTTCTGCTGGC
TTTTTTTCCCCTAGAGAATCCTGACTAATCCTGTTTCTTTTTCCACCCAC
TTCTGTGATATTCTATATGTATTCTCTCTCTTTTTTCAATTTTAATTTTT
TATTTATTTACATTCCAGCCATTGGTCCTTTCCCTGGCCTTCCTCCCACA
GTTCCACATCCCATTCCTCCTCCCCTTTGCCTCTGAAAGGGTGCTTCCCC
ATACCAGACCTCCCCCTTCCCTGGGGCCTCAAGTCTCTTAGGATTAAGCC
TATCTTCTCCCACTGAGGCCTGACCAGGCAGACCTCTGCTATATTTGTGC
CAGGAGCCTTATACTGGCCCATGAATGGTCCTGTGTGTGGATCATTCTCT
GGTATCTCCCTGGGGTCTGGGGTAAGTTGAGAATGCTGGCCTTCACATGT
GGGTCGCTCTTCTGTACAGCTCCTTCAATCCTTCCCCTAATTTAACCATA
GGGTTTCCCTGACCCTAAGTCAATGGGTGGGTTGTAAGTATCTGCCTCCT
G
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACTTATAAACAAGGTCCAATTGAAT
GTGAGCTTAGGTAGATGAGTGTGCAATTAGCTACTGCAAGTCAGTACTCA
TTAGCCTCAATGAGTCTCTTTTCATAGGTATTGACAAAAGCTTCCATGTG
TGCTCTGTCCTCAACTATAAATTTTCTAAATAGAAAGATTCTTTCCCAAA
TTGAAAGCCAGCAGGATGCATTAAATTGCAGACAAGGTGTTCTGCATTGT
CAATGGCATCCAATACACCTCGCTACTGCATCCCACCTACATTTATCTGA
GTCTCTGAAAAGCTCTCTATTTTACCCACACCCACCACCGTCTGTGCAGA
TCTTCACCCACACACACCGTCTGAATAAAGACTCAATGAGCACGCTGACA
GAAACATTTCCCCTGCAGTCACAAAATAAAATCAACCTCTTTGGTGGAAC
ACAGTCATGGTGCTTGAAGACATCTCAGAAGCTACAGAAACATGGCCTGC
GTTTAAGAAGAATACAAAAGTCAAGCTCTTCCTGTTTTGGATGTTTATTT
CAGGATATTAATGAAGGAAATTTAGGTCCTTCCTGTGGAGTTTAAGTCTT
TCTCTTACAAGCTGTAAATGACACTAAGACCTTTTGTTTGACCAGTACAT
TCTTTTTATTAAACATATTCTTCAGAGCAATGCATGTATGGGATCATGTA
GGTATAATCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h05.g1 MSMg01no279_h05.g1 CHROMAT_FILE:
MSMg01no279_h05.g1 PHD_FILE: MSMg01no279_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
         (290 letters)



>mm_chr7_96103159_96103848
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttataaacaaggtccaattgaatgtgagcttaggtagatgagtgtgcaattagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aacttataaacaaggtccaattgaatgtgagcttaggtagatgagtgtgtaattagctac 260

                                                                       
Query: 61  tgcaagtcagtactcattagcctcaatgagtctcttttcataggtattgacaaaagcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaagtcagtactcattagcctcaatgagtctcttttcataggtattgacaaaagcttc 320

                                                                       
Query: 121 catgtgtgctctgtcctcaactataaattttctaaatagaaagattctttcccaaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgtgctctgtcctcaactataaattttctaaatagaaagattctttcccaaattga 380

                                                                       
Query: 181 aagccagcaggatgcattaaattgcagacaaggtgttctgcattgtcaatggcatccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccagcaggatgcattaaattgcagacaaggtgttctgcattgtcaatggcatccaat 440

                                                            
Query: 241 acacctcgctactgcatcccacctacatttatctgagtctctgaaaagc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacctcgctactgcatcccacctacatttatctgagtctctgaaaagc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)