BAC Information

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BAC

Clone NameMSMg01-280C14
Chromosome7 (Build37)
Map Location 76,060,746 - 76,060,979
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280C14.T7 (MSMg01no280_c14.b1)MSMg01-280C14.TJ (MSMg01no280_c14.g1)
ACCAG417324AG417325
length758758
length of high quality
(start - end)
233 (134 - 366)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no280_c14.b1 PHD_FILE: MSMg01no280_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005CHROMAT_FILE: MSMg01no280_c14.g1 PHD_FILE: MSMg01no280_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTTGTTTATCCCTGAGAAACATTTTTAAATGGGGTTATTTGATTT
TCTGGAGTCTACCTCCTTTTGTTACTCATATATATTGGATATTAATCCCC
TATCTAATTTAGGATAGGTAAAGATACTTTCCCAATCTGTTGGTGGCCAT
TTTGTCTTATTGAAGGTGTCTTTTGTCTTACAGAAGCTTTGCAGTTTCAT
GAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGTCCATATCTTCGAGGCTTTTCCCCACT
TTCTCCTCTATATGTTTTTTTGTCTCCGCCCCTCTGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTATTACAAGGAAATATGAAAGGATCGATTCTCA
TTCTTCTACATGTTAACAACCAGTTGTGCCAGCACCATTTGTTGAAAAGG
TTGTCTTTCTTCCACTTGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGCGTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGA
CTACTTGTCTGTCATTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTACGTCAGGCATGGTGATTCCCCCAGAGGTTCTTTTA
TCCTTGACAAGAGTTTTTACTATCCTACGTTTTTTGATATTCCAGATGAA
TTTGGCCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCCATACTTTCTGAGTTTACAT
TTACGCAGACTTAAAGAATCTTCTCTGCGGATACTTTGAGGGGTTTACAT
AATGAAAACCAAATCAGATCAATTCTCGAATCTACTAGAGCCCTTATCAA
GGGCGCGAAGCCGCTCTGCAAAGCAACCTCACCTGGCAGCTCTTGAATAA
GCGCTACTCCTGTGACTTACATAAATGCCCCACTGTTAAAAATGGTTCCC
GTTTGTGATGCGGGTGGGAACCATTGGAACCATTGGAAGGTGGAACCTAC
AGAGAGGCATTGGGTTTTTTATTCTTGGCCTCCCCACTCTTTCCTTCACC
CCTCTTTGGCTTCCTGGCTTCCCGATGAGCAGGATATACTTCCTTACTCC
CATCATGACATGTGGCCTCACCACAGGCTACAAAGCAATGTGCCAACCAC
AGATGGAAACCTCCGAAAGCTTCAGCCAAAGTACATCTTTTTCTCTTTGT
GAATTGATTATCCCGGATATTTCTCGTCGTGACGTCAAACTGACTGACAC
ACCTGCTAAATTACTCTCTCGAAAAGACCCAGAAATCTTTATTTTAAAGT
AGTCCCAGGTGACTTTGATGTGACAGGTCCTGAGCTTGAAATTTTGTGCT
TTTGTTGACCTGCAAGGCCCCTGAGATGTTTCATCATCCCAAACGCTCGG
CAGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_c14.g1 MSMg01no280_c14.g1 CHROMAT_FILE:
MSMg01no280_c14.g1 PHD_FILE: MSMg01no280_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:56 2005
         (234 letters)



>mm_chr7_76060546_76061180
          Length = 635

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%), Gaps = 1/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactttgaggggtttacataatgaaaaccaaatcagatcaattctcgaatctactagagc 60
           ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 201 tactttgaggggtttacatgatgaaaaccaaatcagatcagttctcgaatctaccagagc 260

                                                                       
Query: 61  ccttatcaagggcgcgaa-gccgctctgcaaagcaacctcacctggcagctcttgaataa 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttatcaagggcgcgaaagccgctctgcaaagcaacctcacctggcagctcttgaataa 320

                                                                       
Query: 120 gcgctactcctgtgacttacataaatgccccactgttaaaaatggttcccgtttgtgatg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcgctactcctgtgacttacataaatgccccactgttaaaaatggttcccgtttgtgacg 380

                                                                 
Query: 180 cgggtgggaaccattggaaccattggaaggtggaacctacagagaggcattggg 233
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtgggaaccattggaaccattggaaggtggaacctacagagaggcattggg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)