Query= MSMg01no280_e24.b1 MSMg01no280_e24.b1 CHROMAT_FILE:
MSMg01no280_e24.b1 PHD_FILE: MSMg01no280_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:07 2005
(712 letters)
>mm_chr7_101657795_101658906
Length = 1112
Score = 1224 bits (633), Expect = 0.0
Identities = 689/709 (97%), Gaps = 4/709 (0%)
Strand = Plus / Plus
Query: 6 gaattcattgtattt--tgccaatttttatgctttatttcttaaaattatttctgagtaa 63
||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattgtatttcgtg--attttttacgctttatttcttaaaattatttctgagtaa 263
Query: 64 agtacaataatgacatcttacgatataaaaacatatgttatgtaagtagaaaagaatagg 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtacaataatgacatcttaagatataaaaacatatgttatgtaagtagaaaagaatagg 323
Query: 124 gcatgcaatttgagccccattaaaatttgaagttaaatacgtattttattttatcttatt 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 gcatgcaatttgagccccattaaaatttgaagttaaataagtattttattttatcttatt 383
Query: 184 ttatttgcattggagcctgaaactgtgtttctattaacagcaaatattacacagttaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatttgcattggagcctgaaactgtgtttctattaacagcaaatattacacagttaata 443
Query: 244 aatcattgggaaaacatacattttgaagaatgtttcaaattaatttttgaaggcatttga 303
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 aatcattggaaaaacatacactttgaagaatgtttcaaattaatttttgaaggtatttga 503
Query: 304 gtgatttaattttacagaaaattaaaatgagttctgagcgtggtagctcatgtcttcaat 363
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct: 504 gtgatttaattttacagaaaattaaaatgagttctgtgcgtggtagttcatgacttcaat 563
Query: 364 cccaatattctagaaccgcagaatctctatggggtcaaggcatgcctgttctaaatagca 423
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccaatattctagaacaacagaatctctatggggtcaaggcatgcctgttctaaatagca 623
Query: 424 agttccaggtcagctgaggctatataatgagatgctgttttaaacaaatgaaggaatcag 483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 agttccaggtcagctgaggctatataatgagatgctgttttaaacaaacgaaggaatcag 683
Query: 484 gattatatcttaattattatttgctttccaaaaggtacatttggaaatcattagtatggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 gattatatcttaattattatttgctttccaaaaggtacatttggaaatcattaatatggt 743
Query: 544 caaggaaatgatgtgaagttttgaaaatttttcttataataatcctgttattctctataa 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 caaggaaatgatgtgaagttttgaaaatttttgttataataatcctgttattctctataa 803
Query: 604 tattaaatgtattattttgatagataaaaaagaagcactgtgaaattaattcagtctgga 663
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 804 tattaaatgtattattttgatagataaaaaagaagcattgtgaaattaattcagtctgga 863
Query: 664 aacatgttatcaagattctttgtacatttggaaaagctacagttgataa 712
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aacatgttatcaagattctttgtacatttggaaaagctacagttgataa 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_e24.g1 MSMg01no280_e24.g1 CHROMAT_FILE:
MSMg01no280_e24.g1 PHD_FILE: MSMg01no280_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:07 2005
(311 letters)
>mm_chr7_101819555_101820264
Length = 710
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 1 ccatttttctagaaaagttattgaatattttattatttgaaaagtccagatttcttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccatttttctagaaaagttattgaatattttattatttgaaaagtccagatttcttcatt 451
Query: 61 cattctcaatgttttctgtctttttttggataaaggacaggttcagtttttactatcaaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cattctcaatgttttctgtc-ttttttggataaaggacaggttcagtttttactatcaaa 392
Query: 121 tgcttgctgcctggctccctaaaaggctattacttttaaacttctttgatgtttactttg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 tgcttgctgcctggctccctaaaagactattacttttaaacttctttgatgtttactttg 332
Query: 181 ctgaaatgaaattaaattctgtcaacagtagacaaaatggccaacagcacaaactgaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctgaaatgaaattaaattctgtcaacagtagacaaaatggccaacagcacaaactgaaaa 272
Query: 241 agatatttattcatttattattctcattattttaatggaagactgagataaaaattgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 271 agatatttattcatttattattctcattattttaatggaagactgagatgaaaattgtgt 212
Query: 301 gcaacttagca 311
|||||||||||
Sbjct: 211 gcaacttagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
