BAC Information

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BAC

Clone NameMSMg01-289L23
Chromosome7 (Build37)
Map Location 4,018,060 - 4,018,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289L23.T7 (MSMg01no289_l23.b1)MSMg01-289L23.TJ (MSMg01no289_l23.g1)
ACCAG419216AG419217
length722717
length of high quality
(start - end)		274 (440 - 713)644 (72 - 715)
definitionCHROMAT_FILE: MSMg01no289_l23.b1 PHD_FILE: MSMg01no289_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:07 2005CHROMAT_FILE: MSMg01no289_l23.g1 PHD_FILE: MSMg01no289_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGTAACACCGAATGGCAGAGAAACACCTGAAAAAATG
TTCAACATCCTTAATCATCAGTTAAACAAAATCAAAACAACCCTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGT
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATGGTACTACCGGAGTATTTTGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTTCTTTTTGTACCACCCACACCTGCTCCACTATG
TTCATAGCAGCCTTGTTTATAATACCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAAT
GGATAGACATGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGG
AACTCGCACAATATATACTCACTGATAAGTGGATATTAGCCCAGAAACTT
AGGATACCTAAGATATAAGATACAACTTGCCAAACACATGAAATTCAAGA
AGAACGAAGACCAAAGTGTGGA

ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTATAATCGATTTCCTTGAATTCCAGA
TCCTCTTGCCTTTACCTCCTAACCTCTGGAACAGCAGGTGTGTTCCACCA
CACTGTGTTGTGTTTATTTATTTATTTATTTATTTACCCACTGAATCCAA
TTAATGCTTTCCAAATATCCATGGATATAAAGTCAACACGGGTCACACCC
TTAAAGATGCATTTATATTAATGGGAATAGACAGTTTTGCAGTCTGTCTG
TTCACCACTTTAGCATGAGTTATGGCTTGGAGAGTTACTGGCTCCTTTAT
CTTGTCAAGTCACACTTGTAAGAGCATTGGAGTTTCACCTGCAAAGACAA
TCTGATTTGTGGCTGTACTCACCATGCTTATATATGATTCAGAACGACAG
GAGAATCACCAGAAAAAAATCTATTTTCCCTTCCTGACTGTTCCTGAAGT
TTGGACTCTGATGCAAGTATTGGCTTATTAAAGAGCTACTGTTCCCTTCT
CTGTTAACAGAAGAAGAACTTGCAACTGAGGAGTTGGAGGGGTGTGTACT
CCTGTGTTCCAGAACTGCCAACACCAATAAGGCATCTTCTACGGGAGGTA
ATATTGAGTCACATGGTCATATGTGTCTCTGTATTGAATATGACTGAGGA
CTTAGATGTGCACTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_l23.g1 MSMg01no289_l23.g1 CHROMAT_FILE:
MSMg01no289_l23.g1 PHD_FILE: MSMg01no289_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:07 2005
         (644 letters)



>mm_chr7_4017860_4018903
          Length = 1044

 Score = 1145 bits (592), Expect = 0.0
 Identities = 631/644 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactataatcgatttccttgaattccagatcctcttgcctttacctcctaacctctggaa 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 cactatagtcgatttccttgaattccagatcctcttgcctttacctcctaagttctggaa 260

                                                                       
Query: 61  cagcaggtgtgttccaccacactgtgttgtgtttatttatttatttatttatttacccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaggtgtgttccaccacactgtgttgtgtttatttatttatttatttatttacccac 320

                                                                       
Query: 121 tgaatccaattaatgctttccaaatatccatggatataaagtcaacacgggtcacaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatccaattaatgctttccaaatatccatggatataaagtcaacacgggtcacaccct 380

                                                                       
Query: 181 taaagatgcatttatattaatgggaatagacagttttgcagtctgtctgttcaccacttt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 taaagatgcatttatattaatgggaatagacagttttacagtctgtctgttcaccacttt 440

                                                                       
Query: 241 agcatgagttatggcttggagagttactggctcctttatcttgtcaagtcacacttgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatgagttatggcttggagagttactggctcctttatcttgtcaagtcacacttgtaa 500

                                                                       
Query: 301 gagcattggagtttcacctgcaaagacaatctgatttgtggctgtactcaccatgcttat 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||
Sbjct: 501 gagcattggagtttcacctgcaaagacaatctgatttgtggctgtactgaggatgcttat 560

                                                                       
Query: 361 atatgattcagaacgacaggagaatcaccagaaaaaaatctattttcccttcctgactgt 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 atatgattcagaacgacaggagaatcaccagaaaaaaatctaatttcccttcctgactgt 620

                                                                       
Query: 421 tcctgaagtttggactctgatgcaagtattggcttattaaagagctactgttcccttctc 480
           |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgaagtttggattctgaggcaagcattggcttattaaagagctactgttcccttctc 680

                                                                       
Query: 481 tgttaacagaagaagaacttgcaactgaggagttggaggggtgtgtactcctgtgttcca 540
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 681 tgttaacagaagaagaacttgcaactgaggagttggaggggtgtgcacacctgtgttcca 740

                                                                       
Query: 541 gaactgccaacaccaataaggcatcttctacgggaggtaatattgagtcacatggtcata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaactgccaacaccaataaggcatcttctacgggaggtaatattgagtcacatggtcata 800

                                                       
Query: 601 tgtgtctctgtattgaatatgactgaggacttagatgtgcactg 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtgtctctgtattgaatatgactgaggacttagatgtgcactg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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