BAC Information

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BAC

Clone NameMSMg01-290C11
Chromosome7 (Build37)
Map Location 51,073,520 - 51,073,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7
Downstream geneKlk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290C11.T7 (MSMg01no290_c11.b1)MSMg01-290C11.TJ (MSMg01no290_c11.g1)
ACCAG419513AG419514
length734724
length of high quality
(start - end)		246 (116 - 361)286 (57 - 342)
definitionCHROMAT_FILE: MSMg01no290_c11.b1 PHD_FILE: MSMg01no290_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:37 2005CHROMAT_FILE: MSMg01no290_c11.g1 PHD_FILE: MSMg01no290_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCACTTTTCAAAGAGGATCCGCGGAATTCACCAT
TTTCCTAAAAATATGCAATGTAGCCTGCTATACCTGGCTATACTGGAGAT
TCTTATTTATACCTTGCTAAGCTTGCTCTGAGATTTCTAACTCCTATCCA
CTAAAATACTGTAAGAAAGCATACAAGAGCCTCCATGACATTGCAGGGTC
AAATCTGGAGCATCCTAGCTATGGGAATGAATGCCAAGGTTCCAGGAGGC
TGAGTTTCGTTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCCTCTTGGC
CTGTCAAGTATACTTCACTGGAGTGGGCAGACCATTCTCCCGCTTTCGTT
TTATTTTTCAGCCGAAGTTCCAGAATGTCCTGCTTCATTGTAGCTACAGA
TCTCACAAGTACTCTAAAGATGAGTGGAAACACAATGATTACTAATAAAA
TAATGCCAATAATAATAGGAAGTAGGATTATATATGGAATCCAATCCAGG
GGATTCAATGCACTTAGGTTATTTTTTAAATCTCTGGCCAATTCATCAAT
GTTCCAAGTGTCTAAGTGACTTCTGCTAATATCTGAATTTTATGCCTTTC
TAGCCTTAATATTTGCTATATCCTGCCCTATTGCTAAGACTACTACTTCT
AAGACATTAACTTTTATCTCCAATTTTTTTATCTATAATATGCAGCCCTG
ACAAATCTATGGAAAATATCCTATGCATATCATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATGCTCAGTTGGATTCTTTGGAAAGGGCTTTGATTTTGTTTGG
CCACACAGTAGACTTATAGTGAAAGCCAATGGCTCCTGGAACTTGCTTTT
AAAACCTACAGTAGCAACAACAACAACAACAACAACAACAAGCCGGGCAT
GGTGGCTCACGCCTTTAATCCCAGCACTCGGGAAGCAGAGGCAGGTAGAT
TTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA
TTTCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACAAACTAACAA
ACAAACCCACAAACAAACAAACCAAAATAAAAAAACCAAACCTACAGTGG
CACCTTCCACTCATTTGCTGTGGGTGTCTATCTCTCCTCTTACCTCAGAG
GCCAGCAAGGGTGGACCTCCCCTTCATGGCTGGCCTTTGGTTTCATCTGC
TGTTTTGCTGGTAACATTACAAAGGGAAATATCATCTTTGAATCCACATG
GGGATCAGCCATGTGTCCTGCCGCTGTGCGCTAGAGACATGAGGTTTAAC
AGCAGTAACCAACCATTTTCTGACTGGGTTCGAGGCCTGCTTTTACCCGA
AGGAATTCATGCCTGTGTACTGCAACCTGCTCAGTACCCCAAGGCTTGTC
AAGTCATACCCCCTATGTAATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_c11.g1 MSMg01no290_c11.g1 CHROMAT_FILE:
MSMg01no290_c11.g1 PHD_FILE: MSMg01no290_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:37 2005
         (286 letters)



>mm_chr7_51073320_51074005
          Length = 686

 Score =  476 bits (246), Expect = e-139
 Identities = 272/286 (95%), Gaps = 9/286 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctcagttggattctttggaaagggctttgattttgtttggccacacagtagactta 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 201 catgctcagttggattctttggaaagggctttgattttgtttggtcagacagtagactta 260

                                                                       
Query: 61  tagtgaaagccaatggctcctggaacttgcttttaaaacctacagtagcaacaacaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgaaagccaatggctcctggaacttgcttttaaaacctacagtagcaacaacaacaa 320

                                                                       
Query: 121 caacaacaacaacaagccgggcatggtggctcacgcctttaatcccagcactcgggaagc 180
           ||||||         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaa---------gccgggcatggtggctcacgcctttaatcccagcactcgggaagc 371

                                                                       
Query: 181 agaggcaggtagatttctgagtttgaggccagcctggtctacaaagtgagttccaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agaggcaggtagatttctgagtttgaggccagcctggtctacaaagtgagttccaggaca 431

                                                         
Query: 241 gccatttctatacagagaaaccctgtctcaaaaaacaaacaaacaa 286
           ||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gccagggctatacagagaaaccctgtctcaaaaaacaaacaaacaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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