BAC Information

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BAC

Clone NameMSMg01-290K13
Chromosome7 (Build37)
Map Location 65,603,006 - 65,603,584
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K13.T7 (MSMg01no290_k13.b1)MSMg01-290K13.TJ (MSMg01no290_k13.g1)
ACCAG419876AG419877
length743748
length of high quality
(start - end)
579 (108 - 686)672 (77 - 748)
definitionCHROMAT_FILE: MSMg01no290_k13.b1 PHD_FILE: MSMg01no290_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:16 2005CHROMAT_FILE: MSMg01no290_k13.g1 PHD_FILE: MSMg01no290_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGACATATCCAAACTTGATTTACTTGCTTTTAGATGAAGACACA
GACATACATTTTCTCATTTACAGCATTAGGTAGAGAAAGACCATTTCCTG
TCCTTTCCTTTCCCAGAATCATTTATCTTTCAAGCTGCTACAGATTTCTA
CTGCACGATGGCAGCTGCTGTAAGAAATGGCGAGGGTGTGGGGCCTCACA
TAGTGCCACGTTTCATCTCTCATCTGGCTATCTTTATCCACTCACAGATC
TGAGCCTTTAATAATGCCTTACTATGCTCAAATCCTTCACACAGGAATGA
GGTAGGAGAGTTGAATGGTTTCTTTCCTCCCTCCTATCTATGTACAGTCT
GCGTGTACGTGCATACATGCGTGTATGTTTTTATGTCAGAGGTTGACATC
AAATAGTTTTGATAGCCTTATTTTGTGAGATATTCTCTGAGCCTAGACTT
CACTGATCACCCAGGGAGGTCCAGATATCTGACTATGTCAGGTCCCACTG
TATAGGGATAAAGGCCCAGGAATACATTTGAACTTTTTGATAACACAGGT
GCTAGGGATCCAGAGTTATGTCCTCATGTTGTAGAGCCAAGCTAAGCCAT
ATTCTCAACTCCCAGTTTCTCTTTGCGATATAAAGACATAAACATATGGG
GAGCTAAGGGAATTTCTGAATTCTCTTGGCTAAGTCATGACAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAATGACATGGGCTGGGTGAAT
GGTCAAGGAACAGAACCAATATACCTGTTGTCTACAAGGAACAAATCTCA
ACATTAAATCGAGGTAGCACTTTAGAGAAAAAGGTGTTTAAAAACAAAAA
ACAAAAAACAAAACCAAAAAAAACTACTCCAATCAACTGGGACCAGGGAG
CAAGCCAATGTGTTGTTATTTTAATATCTGACAAAATAAACCTCAAAATA
GAAGTAATTAGAAGAGATAAACAACACTTCATTCTACTTGAGGGAACAAT
TAGCCAGGAATATATCAATACCTTAGACATATATATACAAACTGTACTGT
ACCCATCTTCTTAAAAAGTATAAAGTTGGAGTTAAAGACACATCAATAGT
AGGTGACTTTGGTACCCAGCTTTCTCCAATAAATAGGTCATCTGGACAAA
AGATAAACAGAGAAACATTAGAAGTATATGTTGGACTAACAACAGAGTAT
ATACATACTATTTTGCATCCCATTGAAGCCTCTGTAAAATGAACCACCAA
GTCCTTAATGAGTATAGAACAATTGAAATAATTCTATGTATCCTATCTGA
TCATAAAGCAAATATTTATAGACTCAGCCACATCACCAACATTAATCAAA
GAAGTGATCAACTATACCCATAGACCCATAACAAATGAGACTATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k13.b1 MSMg01no290_k13.b1 CHROMAT_FILE:
MSMg01no290_k13.b1 PHD_FILE: MSMg01no290_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:16 2005
         (579 letters)



>mm_chr7_65602806_65603784
          Length = 979

 Score = 1065 bits (551), Expect = 0.0
 Identities = 572/579 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttctcatttacagcattaggtagagaaagaccatttcctgtcctttcctttcccaga 60
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 attttctcatttagaggattaggtagagaaagaccatttcctgtcctttcctttcccaga 720

                                                                       
Query: 61  atcatttatctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atcatttatctttcaagctgctacagatttctactgcacgatggcagctgctgtaagaaa 660

                                                                       
Query: 121 tggcgagggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttat 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tggggagggtgtggggcctcacatagtgccacgtttcatctctcatctggctatctttat 600

                                                                       
Query: 181 ccactcacagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccgctcacagatctgagcctttaataatgccttactatgctcaaatccttcacacaggaa 540

                                                                       
Query: 241 tgaggtaggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgaggtaggagagttgaatggtttctttcctccctcctatctatgtacagtctgcgtgta 480

                                                                       
Query: 301 cgtgcatacatgcgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagcc 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cgtgcatacatgtgtgtatgtttttatgtcagaggttgacatcaaatagttttgatagcc 420

                                                                       
Query: 361 ttattttgtgagatattctctgagcctagacttcactgatcacccagggaggtccagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttattttgtgagatattctctgagcctagacttcactgatcacccagggaggtccagata 360

                                                                       
Query: 421 tctgactatgtcaggtcccactgtatagggataaaggcccaggaatacatttgaactttt 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 359 tctgactatgtcaggtcccactgtatagggataaaggcacaggaatacatttgaactttt 300

                                                                       
Query: 481 tgataacacaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgataacacaggtgctagggatccagagttatgtcctcatgttgtagagccaagctaagc 240

                                                  
Query: 541 catattctcaactcccagtttctctttgcgatataaaga 579
           |||||||||||||||||||||||||||| ||||||||||
Sbjct: 239 catattctcaactcccagtttctctttgtgatataaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)