BAC Information

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BAC

Clone NameMSMg01-290L07
Chromosome7 (Build37)
Map Location 71,881,628 - 72,050,540
singlet/doubletdoublet
Overlap geneApba2, 5730507A09Rik, Ndnl2
Upstream geneOtud7a, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L07.T7 (MSMg01no290_l07.b1)MSMg01-290L07.TJ (MSMg01no290_l07.g1)
ACCAG419911AG419912
length716719
length of high quality
(start - end)
475 (133 - 607)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no290_l07.b1 PHD_FILE: MSMg01no290_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:20 2005CHROMAT_FILE: MSMg01no290_l07.g1 PHD_FILE: MSMg01no290_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,050,130 - 72,050,540)(71,881,628 - 71,881,915)
sequence
NCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGGTATGATACCCACACCCAGAAAGACAGCCTGGCTCACGG
AATTTGACAATGAACAAATCATTTGACCCCATAGCTTGCTGTCTTTGTAA
AGCTTGCATTGTGACTAAGAAAACACTGGGGCTTGTGTAATTGTTCCTTG
GGAGAGGTTAATAAATGTCCCCAGATAGGGCACTGATGACAGAGTAAAGA
AACAGCTCCGCCCAAATCTAACTTAGTGAACCAGTAAGGGTGTTGGGTTT
ACTTACAGGAGCCTGAGAAGGGGTTAACTACAGGAATGTGGTGGACTGTC
AGCAGATTCATCATCAACACTCCCACTCTACAATGGACAACAACTCTCTT
CTCACCCACAGTTATCCCTATTTATATTGCCTTGGGAGGACTCATTAATC
CTGCAGATTTCAGGAACTTCCTAAGACTTGGGAATAAGTGTGATTCACTT
CCTGAGTCTCAATGAACCTCCCTCACGGTAGACTATTTCAGTTTGGAGGG
AATACCTATACAACCAGGGAACAAAAAATTGTTCAGACGATTACATTATG
TGAAGTGATTAAAGGCATAAAGACTATAGGGAGCTTCCGGTGGATGGAGA
AGACTCAGTCTCTCACAGGTTGACCAAGGAAAGCTTTCTGAGAGGCAACT
TGAATGTCCAGCCTGC
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCAAGCAAACAGACTTGCTG
TGGCTTCTCCATTTCGGATTATTGTTCCCTTGCATGTTGCCTCGGGTCAC
TGAGTGCCAGGCAGTGAACTGTAGTGGACCTTTGGGTTGTAACCACGCAT
GCTGTTCTTTCTTAGAATTCTGAGGGTGATGCTCAGACACTGACAGAAGT
AGACCTCTTCATTTCGACCCAGAGGATCAAGGTCTTAAATGCTGACACGC
AGGTAAGCACTTGAAAGACAGTGGTCCAGAGTCACCATGGCCAACTCCTA
CACCTGGGACCTCAGGATTATTTCCAGCTAGCTGCAGAAGAGGAGTGTGC
GTCTGTGCCCAGGGGAAGGGCACTTTTGCTTATATGTCACTGTCAGGGAA
TCTGGGTGACGTGCTGGACTACTGGTTTTCAACCCTCCTAATGCTACAAC
CCATCTACATACATCTCATGTTGTATGACCCTGCCCCCAACTATAAAGTT
ATCTTCGTTGCTACTTCATACCTGTTAAGTTTCCTACTTTGTTATGAGTC
AGAATGTAAAATATTTTTTCAAGATAGAGTTTTGCCAAAAGGTTTTTGAC
CTACAGGTCGAGAAATGCTGCACTTATACTTGCATCCCTTTCCCCCTGAA
ACTGAATGCTCTTGCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l07.b1 MSMg01no290_l07.b1 CHROMAT_FILE:
MSMg01no290_l07.b1 PHD_FILE: MSMg01no290_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
         (475 letters)



>mm_chr7_72049666_72050540
          Length = 875

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 65  cttgggagaggttaataaatgtccccagatagggcactgatgacagagtaaagaaacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cttgggagaggttaataaatgtccccagatagggcactgatgacagagtaaagaaacagc 816

                                                                       
Query: 125 tccgcccaaatctaacttagtgaaccagtaagggtgttgggtttacttacaggagcctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tccgcccaaatctaacttagtgaaccagtaagggtgttgggtttacttacaggagcctga 756

                                                                       
Query: 185 gaaggggttaactacaggaatgtggtggactgtcagcagattcatcatcaacactcccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaaggggttaactacaggaatgtggtggactgtcagcagattcatcatcaacactcccac 696

                                                                       
Query: 245 tctacaatggacaacaactctcttctcacccacagttatccctatttatattgccttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tctacaatggacaacaactctcttctcacccacagttatccctatttatattgccttggg 636

                                                                       
Query: 305 aggactcattaatcctgcagatttcaggaacttcctaagacttgggaataagtgtgattc 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aggactcattaatcctacagatttcaggaacttcctaagacttgggaataagtgtgattc 576

                                                                       
Query: 365 acttcctgagtctcaatgaacctccctcacggtagactatttcagtttggagggaatacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acttcctgagtctcaatgaacctccctcacggtagactatttcagtttggagggaatacc 516

                                                              
Query: 425 tatacaaccagggaacaaaaaattgttcagacgattacattatgtgaagtg 475
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 515 tatacaaccagggaacaaaaaattgttcagacgattagattatgtgaagtg 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_l07.g1 MSMg01no290_l07.g1 CHROMAT_FILE:
MSMg01no290_l07.g1 PHD_FILE: MSMg01no290_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
         (288 letters)



>mm_chr7_71881428_71882115
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaccaagcaaacagacttgctgtggcttctccatttcggattattgttcccttgcatg 60
           |||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 201 ctcaccaagcaaacaggcttgctgtggcttctccatttcggattagtgtttccttgcatg 260

                                                                       
Query: 61  ttgcctcgggtcactgagtgccaggcagtgaactgtagtggacctttgggttgtaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctcgggtcactgagtgccaggcagtgaactgtagtggacctttgggttgtaaccac 320

                                                                       
Query: 121 gcatgctgttctttcttagaattctgagggtgatgctcagacactgacagaagtagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgctgttctttcttagaattctgagggtgatgctcagacactgacagaagtagacct 380

                                                                       
Query: 181 cttcatttcgacccagaggatcaaggtcttaaatgctgacacgcaggtaagcacttgaaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cttcatttcgacccagaggatcaaggtcttaaacgctgacacgcaggtaagcacttgaaa 440

                                                           
Query: 241 gacagtggtccagagtcaccatggccaactcctacacctgggacctca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagtggtccagagtcaccatggccaactcctacacctgggacctca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)