BAC Information

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BAC

Clone NameMSMg01-290L10
Chromosome7 (Build37)
Map Location 134,887,166 - 134,887,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2
Downstream geneFbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L10.T7 (MSMg01no290_l10.b1)MSMg01-290L10.TJ (MSMg01no290_l10.g1)
ACCAG419917AG419918
length735738
length of high quality
(start - end)		316 (46 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no290_l10.b1 PHD_FILE: MSMg01no290_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:20 2005CHROMAT_FILE: MSMg01no290_l10.g1 PHD_FILE: MSMg01no290_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATACCAGGCAGGACTACTCAAACTCAGAAATCTTCCTG
CCTCTGCCTCACAAGTGCTGGCCACACAGGTGTGCCACCTGGCTATTACA
GGCTTCTTAGGATCAAATGAGAGGCTGAACGCATTTGGTATTCCAGGTGG
GACTGAGATGTAAACTCCTTGCAGAGTGCTTTGCCTCCCATCAATGATAT
CTGGTTTGATTCTCAGCAGGGCAAAACCAAACAACACCTGTGAGGTGCAT
CCAGCAAGCTTCCAAGTTAGTGGAAAGGACACTAAACAAAGCTCATCTGG
GAATTACTAGAATTTTTTATTGCCGCCCGCCCCCTTTAATAGGAACTTGA
TGGGTAAACAACTGGGTGGAGACGTGGGATGGATGAAAAAGTACAACTTT
GGTCCACGCAAGGAGAGCGCTAGAAGGCCAGAAAGCAGTCCTTGCTAGTT
GAAAGAAACGCCGCCGTGTGGATTTAAAATGGACAGACACTTCCCTGGGA
GCCACGACTGTTACGGGGCTGCAAGGAGCCCCTACTTAGGTTAAGGCTAG
TAGTCCTAGCAAACTGAGACTTGACACAGTTTTGACCCGAGTTAACTTCC
TAAACAGAAAAACCACACCCACCAAGTCTCCAGTAGGGCTGGAAACCCAG
CAGAGACAAGGAAGCAGAGAGATTGGCCTTGGGGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCCAGGCCAGCCTTGCCTG
TAGAGTGAAATTTTCCTTAAAAAGAACAAGCTAGTAAGTAAGTACGTACG
TATATAGTTTAAAAACAAACTGGCTGGAGAGATGGCTCAGCAGTGAAGAG
CACTTGCCCTTCCTTATAGAGGACCTGAGTTTGGTCCCCAGCACCCACAG
GGTGCACAGACACACATGCAGACAAAATACCCACATGTATAGAAATAATT
TAATTTTAAAAGAAAATGAAAACAAAGAAGAAACCTTGCTGCAGACTACG
CAAGGACTCAAGACTCTTTTTTTTCCCTGCCCCAGCCACCCACTCCCCAC
CATTCTAGTCTCACCTGGCAAAATCCACCCACTTCTCGATAATCTTCTTG
GGCGACAGACGAGTACAGATGATGCCAACAAAATCAGGCTGGCAGGAAAG
AGAAGGTCAGAACTAGCAACACTTCCACCCAACTTCAGTTGCCAAATCCC
ACAATTTCTGGAATGCCAGAGCAAGCCCCAAGCCCATCCTCAGCCCTAAG
GNGGCCTGTGGCCAGGTGCCTTTCCCCATTTAACATTCTCAGATCAGCCT
CGGGTCTCGGCTCCCCTTGTCTTCATGTAGCGCCAAGTGTTGAGTTACCA
GCATTCGGATCCCAAGTCTTTGACGTCAGTGTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l10.b1 MSMg01no290_l10.b1 CHROMAT_FILE:
MSMg01no290_l10.b1 PHD_FILE: MSMg01no290_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
         (316 letters)



>mm_chr7_134886963_134887678
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtataccaggcaggactactcaaactcagaaatcttcctgcctctgcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggcaggactactcaaactcagaaatcttcctgcctctgcc 263

                                                                       
Query: 64  tcacaagtgctggccacacaggtgtgccacctggctattacaggcttcttaggatcaaat 123
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacaagtgctggccataaaggtgtgccacctggctattacaggcttcttaggatcaaat 323

                                                                       
Query: 124 gagaggctgaacgcatttggtattccaggtgggactgagatgtaaactccttgcagagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagaggctgaacgcatttggtattccaggtgggactgagatgtaaactccttgcagagtg 383

                                                                       
Query: 184 ctttgcctcccatcaatgatatctggtttgattctcagcagggcaaaaccaaacaacacc 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 ctttgcctcccatcaatgatatctggtttgattcccagcagggcaaaaccaaacaacacc 443

                                                                       
Query: 244 tgtgaggtgcatccagcaagcttccaagttagtggaaaggacactaaacaaagctcatct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgaggtgcatccagcaagcttccaagttagtggaaaggacactaaacaaagctcatct 503

                        
Query: 304 gggaattactaga 316
           |||||||||||||
Sbjct: 504 gggaattactaga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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