BAC Information

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BAC

Clone NameMSMg01-292J09
Chromosome7 (Build37)
Map Location 121,575,902 - 121,576,149
singlet/doubletsinglet
Overlap genePde3b
Upstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
Downstream geneCyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292J09.T7 (MSMg01no292_j09.b1)MSMg01-292J09.TJ (MSMg01no292_j09.g1)
ACCAG421269AG421270
length770840
length of high quality
(start - end)
67 (150 - 216)249 (126 - 374)
definitionCHROMAT_FILE: MSMg01no292_j09.b1 PHD_FILE: MSMg01no292_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:41 2005CHROMAT_FILE: MSMg01no292_j09.g1 PHD_FILE: MSMg01no292_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAATAAATTCGNGCACCGCCNCNGGAANNCCANNANGATAGCTTGCAC
CCGGCAAANACACCANNCGCCNAANTGNNCGNNACAACCNNNNNGNGTTT
CGNTCTTACAGATCAGTTAGTGAATCTCTACTGTTTGTGTAAAGAGTGAT
GTGAATATAGAAGAAAAATAAAATATCAACTAACATTCAGTGGATAAACT
TGTGAAGCTATTATAGTGTTCGCACAGCGTTTTTTTTCAACACCCCCGCC
CCACCGCCCCCANACTGACGAGCCCGCACCCCCCCCCCCCCCACACGTCT
TCATAAACTTTACCACCCCCCACCCAGCCCGCACCCGCAAAAATTTTTTT
TCCCCCCCCCCCCCCCCCAAAAAAGAAAATTTATTATTTTTTTTTTGGTT
CCCCCCCCCTTTTAAAAAAAAAAAAAAAATACCCACCGGTCCCTCCACCT
CCCCTTTCTCACCCCTCACTCCTCCCCTCCCTCCCCCCCCTTTCCCCACC
CTAACCCTCTCCCCCCCCACACCTCCTTTCCTCCTCCTCCCCCCCCTCCT
CCTCTCTATCCCCCCCCCCCCTTCTCTCCCCCCCTCCACCCCTCCCCATT
CTCCCCTTCCCTTTTCCTTCTCTCTCCCTTCTACACCTCCCCCCCCAACC
CCGCCCCCCCCCTCTCTTTTTTTTTTTTCTCCCCCCCACCACCCCCGATT
CTCTTCCCCCTTCTTCTCCCCCCTCTCCTCCCTTCCTCTCCCTTGCTCCC
CCCCCCCCCTTTCCCTCTCC
CGGGGTTGTTCTTNTTTCTTACTCCCCCNNNCNCCNNNNNNNNNNNNCTT
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCCAAACTGTATTTTCTAAAATTA
AAGTAGTCAGTTTTTGAAAAATTTATTCCCTTATAGAAAATCTGTGATAG
TCTTACCATATAATGAGTGCTCACTAAAGATATGCAATAAAATCCAATAA
TATGTAGAAGTAATAAATAAAAGTGTCTCAGGGATTATTAATTTAAAAAA
TCCATTTTATGGATTTTTGTGATGCTGTGACTTTTTTTCAGTGTAGAGTG
GTTTTACCCTTGTACCTAATTTTGTTTTTTTATTTTTTTCCTTTGAGGTG
ATCTCNNTGAATTGTTTTTTTGTTTCCCCCCCCCCCCCCCCGGAGAGACA
TTCCAANACCAGAATAAGCCCCCCTTGTAAAAAAAAAAAAAAAAGACTCC
CTGGGGGAAATCAGGACACATGACCATAAATATGAGTATATTATGTGCAG
TACTTATGTCGTTTATTTCTTACAGTATTACTAAGCTCCTTGTTTCACGA
TAATAAACTTTTTCCACTTATTGCTCCTATGCTATTTTAGAACCGTTACG
ACTTTTTTTACCTTATGCCTTGTTATTCTCTAAATACTCTAATCTCACAC
AACAATTATATCTTTATCACCTCTTTTTTCCTCTTCACTTTACCTGATTC
TTTATTCATTTCTATAACCTGCATTTTCTGTTTTTGCAATCATCCAATTT
AATTTACTCTCTTTATTTTCATTTCCCGTTATCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_j09.g1 MSMg01no292_j09.g1 CHROMAT_FILE:
MSMg01no292_j09.g1 PHD_FILE: MSMg01no292_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:41 2005
         (249 letters)



>mm_chr7_121575702_121576349
          Length = 648

 Score =  451 bits (233), Expect = e-131
 Identities = 245/251 (97%), Gaps = 5/251 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaaactgtattttctaaaattaaagtagtcagtttttgaaaaatttattccctt--a 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  |
Sbjct: 201 ttccaaactgtattttctaaaattaaagtagtcagtttttgaaaaatttatt---tttta 257

                                                                       
Query: 59  tagaaaatctgtgatagtcttaccatataatgagtgctcactaaagatatgcaataaaat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagaaaatctgtgatagtcttaccatataatgagtgctcactaaagatatgcaataaaat 317

                                                                       
Query: 119 ccaataatatgtagaagtaataaataaaagtgtctcagggattattaatttaaaaaatcc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 ccaataatatgtagaagtaataaataaaagtgtctcagggattattaattaaaaaaatcc 377

                                                                       
Query: 179 attttatggatttttgtgatgctgtgactttttttcagtgtagagtggttttacccttgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attttatggatttttgtgatgctgtgactttttttcagtgtagagtggttttacccttgt 437

                      
Query: 239 acctaattttg 249
           |||||||||||
Sbjct: 438 acctaattttg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)