BAC Information

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BAC

Clone NameMSMg01-293E04
Chromosome7 (Build37)
Map Location 77,485,407 - 77,485,715
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293E04.T7 (MSMg01no293_e04.b1)MSMg01-293E04.TJ (MSMg01no293_e04.g1)
ACCAG421758AG421759
length720771
length of high quality
(start - end)
313 (45 - 357)233 (73 - 305)
definitionCHROMAT_FILE: MSMg01no293_e04.b1 PHD_FILE: MSMg01no293_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:36 2005CHROMAT_FILE: MSMg01no293_e04.g1 PHD_FILE: MSMg01no293_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTGGGGGCTAGTAGAGACGGAAGACAAGAGCTGTTTTTAGGGA
AGAAGTAACGCCTGCAGGTCGATACCAGGGGAGAGCATTTCCTAGCTGCC
AGGTGATTTTCTGTGAGACACGTAGGAGGAAAAAACCAGCAACGAACAGC
CTTTATAGGAGGATGGATGGATGGGGTCCGGGGGCAGATTTTATTTTTCT
TGAACAGATGCCTGGCCCTGCCTCTGCCTGCGGACTCGGAGGTGTTCAAT
TTAGGGAATCAATAAAAGTTCTCTGCTCCTTAGCGCCCCTGCCTCCACCT
GCTCTTGCTTTCTCTGTCTCCCCCCCCCCCCCCCCTGCTGTGAAAGACTC
AGTGTCTGGGCCTGCCGCCCCCACACAAAAAAAGACTTTTGTCTCCGGAG
GGCGCAGAGCCCGTTGTTTTCCCTCCTCAGGGGGCATGATACTGGCACCG
GCTTATCATCCCGCCTTTAGTCCTCCGTTTTAGGATTATGGTTCTGACTC
TCCCTGTGGACGTCATCCGCAGTTTCCTTCTGCACCGCCCTCCGGCTAGA
CCCTTGAGGTGGCATTTGTTTCCCGTCCCGCGATTTTAGGGTTAGCGCTA
TTTTCTTTTCCCTGCGCTTTCGGTTAGAGCGCGATACCCTCTGCTGCGTC
CTGTCATATTTTTCTCTGCC
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATAATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTTTTTCTTGGCTTCCGATNGCGAACCACGCCTNAAANTGTTAAT
AAAGGACCCATGGTTCCCCCCCCCCCCCTAAAAAAAAATAAATTANTGTA
GGGGGGAGGGTTGGATTTATTCTAGATCGCCCTCTAACATATGAACGGTA
CACCGATAATGTTGCACCTCATTACCCTGTCAGTATTACCTCCTTCCTCA
CCAATATTGCAATTTACTATGTACTCAACATTTTCCTCCCTGCAGCTATT
ACGCCGTTATTTAGTCTATTCCCCGCTTAATATGGCGCACTATTGTCCTT
TTTTTTTTTTACCACGCCCGCCTTACTTTTTTCCTCCTCCTCCGTTACGT
CCATTATGTAACGTCGCCTTTCTCCTGCATTTATATCCCTTCTATTCTAT
AATCTGGCTCTTTACTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_e04.b1 MSMg01no293_e04.b1 CHROMAT_FILE:
MSMg01no293_e04.b1 PHD_FILE: MSMg01no293_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:36 2005
         (313 letters)



>mm_chr7_77485203_77485915
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccctgggggctagtagagacggaagacaagagctgtttttagggaagaagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctccctgggggctagtagagacggaagacaagagctgtttttagggaagaagtaa 454

                                                                       
Query: 65  cgcctgcaggtcgataccaggggagagcatttcctagctgccaggtgattttctgtgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cgcctgcaggtcgataccaggggagagcatttcctagctgccaggtgattttctgtgaga 394

                                                                       
Query: 125 cacgtaggaggaaaaaaccagcaacgaacagcctttataggaggatggatggatggggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cacgtaggaggaaaaaaccagcaacgaacagcctttataggaggatggatggatggggtc 334

                                                                       
Query: 185 cgggggcagattttatttttcttgaacagatgcctggccctgcctctgcctgcggactcg 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgggggcagattttattttttttgaacagatgcctggccctgcctctgcctgcggactcg 274

                                                                       
Query: 245 gaggtgttcaatttagggaatcaataaaagttctctgctccttagcgcccctgcctccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaggtgttcaatttagggaatcaataaaagttctctgctccttagcgcccctgcctccac 214

                    
Query: 305 ctgctcttg 313
           |||||||||
Sbjct: 213 ctgctcttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)