BAC Information

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BAC

Clone NameMSMg01-294I08
Chromosome7 (Build37)
Map Location 125,090,297 - 125,090,585
singlet/doubletsinglet
Overlap genenone
Upstream geneXylt1, LOC669758
Downstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I08.T7 (MSMg01no294_i08.b1)MSMg01-294I08.TJ (MSMg01no294_i08.g1)
ACCAG422671AG422672
length726728
length of high quality
(start - end)
317 (42 - 358)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no294_i08.b1 PHD_FILE: MSMg01no294_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:13 2005CHROMAT_FILE: MSMg01no294_i08.g1 PHD_FILE: MSMg01no294_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGGCCATAGGAGTGGCCTTATTAGGAGGTGTGGCCTTTTTTGGAATAG
GTGTGGTCTTGTTGGAGGAAGTTGTGTCACTGTGGAGCTGGGCTTTGAGG
TTCTATGCTCAGGCTACGCTCCGTGAGGCACACAGTCTGCTCCCTGCTGC
CTTCGGATCATGATGTAGAACTCTCAGCTCCTCCAGCACCATGCGTGCCT
GCATGCTGCCATGCTTCCTACCATGACGATAATGGACTAAACCTCTGAAA
CTGTAAGCCAGCTCCAGTGAAATGCTTTCCTTCGTAAGAGTTGCCTTGGT
CATGAAGTCTCTTCTTAACACCCCCCCCCAAACTAAGACAGTTCCACAAT
ATTTTATTTTCCCCCATTTTACATAGATAAAATCGGCTTCTTTCTTGTTT
ACCATCATCATCCTCATCCTCACCATCATCAGCCTCACCATCATCCTTAT
CATCCTCATCATCATTTTATGTCCAGACTGTAGTTGCCCCTCTCTCCTCT
CCTCCTAGTCCCTCCCCACTCTTCCCTCTGTCCCACCCCCATCCACTCCT
TCTCATTTCTCTTCAGAAAAGGACAGGTCTCCCATGGATATCACCCAGAT
GTCATTTTAGGTCGCAGTAACATTATGCCTCTCCCCTGTTATTAATGCTG
GCGAGTGAACACTGTATGAGGAGAAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGTATGCTGGGCCTATCCACGTGTGGT
TTGGATCTCAGTTCAAACACTTTGTAAGGGGAATTAAAGCTTGTGTGCTG
ATTAGCCTGCGCTGAGGCTCTAACTCTTCAGAACCCACCACATTGGAGAC
CGGGCTTCTAATGAACAATTCCTGAGTGTGAGTGTGCTTCTTCGTGAAAT
AAAATAAAATAGAGGTTTTCTATGTTGGCATTTATAGTATTGTTTATTTG
GACCACAGAAGGAGTTCATCAAAACAGAGTGGTCCTAAGCCATGCTACTG
AGCTCCAGTGTTTTTTGCCTCTCCGCCCCACATCCCACCATGCAAACAAA
AGAAAGACAGAGAGGACACTACGAAAAGAAACAATGTGGGCGAGCTGACT
CTATCCCTAGTCTTTGGTGCCTGAATGACAACTCCAACATAACAGCAACA
AAAACTGCTGTCACTTGACATTGGGGCCTCATGCCTGCTTTTATCCCACT
TTCGAAGGATGTCCACAAGGATAAAGACTCTTCCTTTTGTGCAAGACTCA
CAGAAAGATATTCCGCCAGGTTTTGGGTTGTAAGAAGCTAATTCGTTGCT
CCCTTATTCTGCACAAAGAGCTGCTTCTGGTGTCCTCCATGTGTCCTTTC
TTACCGAAATAAACCCCGGTTTTCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i08.g1 MSMg01no294_i08.g1 CHROMAT_FILE:
MSMg01no294_i08.g1 PHD_FILE: MSMg01no294_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:13 2005
         (289 letters)



>mm_chr7_125090097_125090785
          Length = 689

 Score =  497 bits (257), Expect = e-145
 Identities = 281/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtatgctgggcctatccacgtgtggtttggatctcagttcaaacactttgtaagggg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtatgctgggcctatccacatgtggtttggatctcagttcaaacactttgtaagggg 260

                                                                       
Query: 61  aattaaagcttgtgtgctgattagcctgcgctgaggctctaactcttcagaacccaccac 120
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aattaaagcttgtgtgatgattagcctgcactgaggctctaactcttcagaacccaccac 320

                                                                       
Query: 121 attggagaccgggcttctaatgaacaattcctgagtgtgagtgtgcttcttcgtgaaata 180
           |||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 321 attggagaccaggcttctaatgatcaattcctgagtgtgggtgcgcttcttcgtgaaata 380

                                                                       
Query: 181 aaataaaatagaggttttctatgttggcatttatagtattgtttatttggaccacagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaaatagaggttttctatgttggcatttatagtattgtttatttggaccacagaag 440

                                                            
Query: 241 gagttcatcaaaacagagtggtcctaagccatgctactgagctccagtg 289
           ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gagttcatcaaaacagagtggtcctcagccatgctactgagctccagtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)