BAC Information

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BAC

Clone NameMSMg01-295D05
Chromosome7 (Build37)
Map Location 26,598,899 - 26,599,096
singlet/doubletsinglet
Overlap geneCyp2s1
Upstream geneEG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950
Downstream geneLOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295D05.T7 (MSMg01no295_d05.b1)MSMg01-295D05.TJ (MSMg01no295_d05.g1)
ACCAG423164AG423165
length763735
length of high quality
(start - end)		201 (129 - 329)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no295_d05.b1 PHD_FILE: MSMg01no295_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:04 2005CHROMAT_FILE: MSMg01no295_d05.g1 PHD_FILE: MSMg01no295_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAGAGGACCGC
GGAANNCCNAGAATTCTCGATTTCCCCCCAACCCCCATGCTAGCTTGCCC
CACCCATCCTGGGCAATCTTTCTCCTCAGTTACTGTCTGATGACAGGTCT
GTCAGGGTTCTCTAGGGGAAGTAGGCAGCGCTATCTTAGTCACCAATGTG
CTGCCAGACTTTTCGGTGGTACTGAGATTGAAGCCAGGGCTCCACACAAG
CTATGTATGCTTCCCATCTTAACATAAAGAGTGATTTCTGTGTTTTGGGC
TCCCCACCCCTCTTCTCTCTCTTTTGTTTTGGGCATGGAATCCATGGCAT
TCCATAAACTGTTTCCCTGCTTTCCCCCACCCCCCCCCCCATAATCTGTT
GAGCCACACCCCTATTCCCCCCCCCCAAAATTGAATAAAAAGACTTTGGG
TGGACGCGGAACGTCATTCTATTGAGGACTTCTACTATTGAACCTCGTCT
CCATTACTTTACTGTTGGAACTCAGTTTCGGTTTCTATCTTCTTTTTCTC
ATACCTGCCCCTTAACTGTTGAATTTTAGTGCAGTCGTTTCCCCATCTGC
ACTTTGTTTCTTTTTTACGTCTATTATGTGTTTTTTGCTGTATGATCGTT
TCCCCATTCCGCTTTATTCCCTCCTATTCTTCTTCTGGCATCGATTCCCT
TTCTAGATCCATTGTTCTGCCTATCTTATCCTTCTTTACCTATTCATCAT
TTCTCTCTATTAT

CTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTGAGGAATACCGAAGGG
CTGAGAAGCACCTGAAAAATTGTTCAGCATCCTTAATCATCAGGGAAATG
CAAATCAAAGCAACCCTGAGATTCCACCTCACACCTGTCAGAATGGCTAA
GATCAAAAATTCAAGTGACAACAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGTAAGTTTGTACAACCACTCTGG
AAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAATACTACTGGATGA
TCCAGCAATACCTCTTTTTTTTATATACCCCCCCCCAAGTTCCAACTACT
AAGAAGGACACATGCTCCACTACCCCCATAGCAAACATATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACCGA
AAATGTAGTACAATTACACTATGGAGCACTTACTACTCAGTTATTACAAA
GAATGAATTTATGAAATTCCTAAGCCTACGGATGGATCTGGAGGGCTTCA
TCCTGAGTGAGGTAAACCTTTCTACAATGAACTCACATGAAATGTACTCT
CTGATAAGTAGATATTAATCCACAAACTTACGAATATCCAGATACCAGAT
ACTATTTGCAACACCTATGTGTACTCAAGAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_d05.b1 MSMg01no295_d05.b1 CHROMAT_FILE:
MSMg01no295_d05.b1 PHD_FILE: MSMg01no295_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:04 2005
         (201 letters)



>mm_chr7_26598699_26599299
          Length = 601

 Score =  360 bits (186), Expect = e-104
 Identities = 195/198 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttactgtctgatgacaggtctgtcagggttctctaggggaagtaggcagcgctatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttactgtctgatgacaggtctgtcagggttctctaggggaagtaggcagcgctatctta 260

                                                                       
Query: 61  gtcaccaatgtgctgccagacttttcggtggtactgagattgaagccagggctccacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaccaatgtgctgccagacttttcggtggtactgagattgaagccagggctccacaca 320

                                                                       
Query: 121 agctatgtatgcttcccatcttaacataaagagtgatttctgtgttttgggctccccacc 180
           ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agctaagcatgcttcccatcttaacataaagagtgatttctgtgttttgggctccccagc 380

                             
Query: 181 cctcttctctctcttttg 198
           ||||||||||||||||||
Sbjct: 381 cctcttctctctcttttg 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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