BAC Information

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BAC

Clone NameMSMg01-296K18
Chromosome7 (Build37)
Map Location 136,904,577 - 136,904,859
singlet/doubletsinglet
Overlap genenone
Upstream geneSec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296K18.T7 (MSMg01no296_k18.b1)MSMg01-296K18.TJ (MSMg01no296_k18.g1)
ACCAG424218AG424219
length712743
length of high quality
(start - end)
283 (430 - 712)184 (118 - 301)
definitionCHROMAT_FILE: MSMg01no296_k18.b1 PHD_FILE: MSMg01no296_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:55 2005CHROMAT_FILE: MSMg01no296_k18.g1 PHD_FILE: MSMg01no296_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGTCTCAACAAGTAAAACCATGAACAACCCAACTACTTCTTC
CTCTCTGGTACCCTTTTCTCCTATCTCAAGATACTGGCTCCATTTTTTGG
GATCCCTGCCAGAATGTAAAAGGCTGCTCCCCATATCAATAAATTTTCCC
CATCCAGCTTTTCCCTTCATCCCATTTTGTCCAGCATCTACCCTCACCAT
TCATGACCGTGAATGCTTGCCTAGCTCCTGTTGGGCCTGTGAGTGGGTCT
CACGGCTCCTTTGGTTAGAGTCTTTACTGTGATTTACTGCTTTAGAGTTG
TGCTGTTTTTTTTTTACTCCCGCGCATTATAACCTCTCCACCCTGACTCA
TTTATTGAGACAGAGCCCTGAAGTATAACCTAGGTTGGCCTCGAACTCAG
AATCCTTCTGCTTCAGCCTCCAGAAGCCGGGATTACAGCCATACATGTGT
ATCAGCATGCTCACTGAGACAGCACTATCTCTCACTCACCAGGAACAATT
CACTTTTAGAGGAGTTAAACACCCTTTAAAAAAATGAATCATGGGTCATG
TGTTCTTGCATATATTATCAGTGGAATGCTTTCTATTTCTCTTTGTGACA
ACACCTTTCTCATCTGGTCACTGCCAGGTTAAAGGATGTTTAGATAGGAT
TCAGCTTTAAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTACCAACAGCTGCATCTCTGAACAGAGCTACTTCACACTTT
TTTTCTCCCTAAGAACATTGTAACCTCTTGCATGCAGCCACAGTAAGGAG
CAGTATGCTAGGGACCATTTTAAATAAGATAGCAAAGAAAAAGCCCAAAT
ATAGAAAACAGTGGTAAAGCTCTGAGATGGACATTTATTTGCACCGTTAG
GAGTGAAGTAAGGATTCCTTATTGTCCCACAGCTGGTTGCATGCATGTGT
TGGTCAACTCTGGTTAGTCACCAGTCTGTCCTTGTCTGCAAATGCTTTGT
TTTTATCTGCCTCCCCCCGCTATAAACACATGATATCAGGTAGCTGAGTT
CACACCTGCAAACTCCATACAATATAAGTTATTAGATTTACCTGTATGTA
GTCAGTATACATAATACACATGGTATTCAAATGTAAATATATACATATGT
ATACACACACACGCATGTACACATTTATTAAAAAGAGTTTTACCTGAGAA
GTTTAAAGATCAGTATAATTACTATTCAGAAAACTTTATTTTCATCTTCT
CCACAAATTCTATTGGAGTTTGTGGCATTTCTTTTCTACTTTGGTATTCA
CTACATACGGTTGTTGCTAGGTGCACACACCTATGTATGATGACCTATGT
CTCTGCATATTTGAAGACTCTAAAATGTTCACCTATTAGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_k18.b1 MSMg01no296_k18.b1 CHROMAT_FILE:
MSMg01no296_k18.b1 PHD_FILE: MSMg01no296_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:55 2005
         (283 letters)



>mm_chr7_136904290_136904972
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggttggcctcgaactcagaatccttctgcttcagcctccagaagccgggattacagc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctaggttggccttgaactcagaatccttctgcttcagcctccagaagccgggattacagc 511

                                                                       
Query: 61  catacatgtgtatcagcatgctcactgagacagcactatctctcactcaccaggaacaat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 510 catacatgtgtatcagcatgctcactaagacagcactatctctcactcaccaggaacaat 451

                                                                       
Query: 121 tcacttttagaggagttaaacaccctttaaaaaaatgaatcatgggtcatgtgttcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcacttttagaggagttaaacaccctttaaaaaaatgaatcatgggtcatgtgttcttgc 391

                                                                       
Query: 181 atatattatcagtggaatgctttctatttctctttgtgacaacacctttctcatctggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atatattatcagtggaatgctttctatttctctttgtgacaacacctttctcatctggtc 331

                                                      
Query: 241 actgccaggttaaaggatgtttagataggattcagctttaaat 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 actgccaggttaaaggatgtttagataggattcagctttaaat 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)