BAC Information

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BAC

Clone NameMSMg01-297A05
Chromosome7 (Build37)
Map Location 71,842,281 - 71,842,874
singlet/doubletsinglet
Overlap geneApba2
Upstream geneOtud7a, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream gene5730507A09Rik, Ndnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297A05.T7 (MSMg01no297_a05.b1)MSMg01-297A05.TJ (MSMg01no297_a05.g1)
ACCAG424467AG424468
length713729
length of high quality
(start - end)
354 (72 - 425)576 (80 - 655)
definitionCHROMAT_FILE: MSMg01no297_a05.b1 PHD_FILE: MSMg01no297_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:21 2005CHROMAT_FILE: MSMg01no297_a05.g1 PHD_FILE: MSMg01no297_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAACAGCGG
AATTCTTTGATTAGATGTCAGCTCACTTTTAAGAAGTTGTTTTGTTTTGA
CTCTTAGCTTTTTGAGTTCTTTGTAGATTCTGGATACTCTGATTTTGACA
CTTAAATCTAGGCCATTGGTTGTTAGTTTGTATTAGATTAGTCCTTAGCC
TAGGTTGACTAATGCGTTTTCTTGATAAAACTTGAATTATGCATTTTTGG
CAGGAATATCATAGAAATGGTGCTGTGTTATGTTTTCAGACCCTATTGGG
TGATGTAAAATTTCAGTGTACACTGTCAGTTTGCAACTCTGGTTAGTGAG
CTAAGACAAGTACCTGCCTAGTCCTCTCCAGTCACTATGAACTTTTCATT
CCCGTCTTTATAACTTACATAAAGATCTCTTTGAAACCTCCTAGGTATTA
GATGTCTCAACAAAATCTCAATGTGGATCTCATGAGATTGATCAGTGGGT
AAAGAACCTCCGTTGCCTCCCGGGTTTGACAATCTTATTTGGATCCTTGG
CACCCACACTGTTTAAAGAAAAAGTTGACTCTCTACGACTGTTCTTAACC
CAGTGGCCCTACTCCATGAACTGCTTTTCCCTCCCAATAAAATGTTACTT
TTTTCTTCTAAAAGAGTATTTCCCTTTTTTCACAATGTTTTTTACCTCGA
GTTTAAGATATTC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTATCCCCGCCATTCCATAGACCTTCGGATTAGAGTG
CTTGGGGCACGCGCATACATGTGCGCGCGTGTGTGTGTGCGTGTGTGTGT
GTGTGTGAATGCAAATGGTTAAATAAATGAGTGTTGGTGGCAGGTGGAAC
TGGGGGACGTCTCAAGCCATCATGGGAGACAAAAATGAAATCTGTTCTTT
CAGAGAAAGGTGTTGAATGGAAAAGCAGGTACTTCAATCTCTCAGCCCAC
GGTGTCCTTAAAGCAATGCTCTTAGTCAAGACATTGGAAAAACTTCTGAG
AGCCAGTTAATGATTATATTCGGTTCTTTTGTTGTTTTGTTATTATTGCT
TTTGTAGTCATGCATTCATTACTTTGTCTGTCCATCCATGGACTAATCCT
GTCCAGAGAGAGCCTAGAGGACCTAGCTCCAGACTGCCCAGGCCCCCAGG
AATGAACGAGCTGTGTGCTCCTCTGGAAGGCTCTGTTGGGTCTTGCCATG
CAGATGAGTTGTATATCCTGTTGTCTCGAGTTGCTCATCTCACACTAGGA
ATTCTGAATTTGGGCCATTAACATCCACTGGTGAATAAATTGAGCCATAA
ATATCCACTGGAATCACCTTGGAAACCAGATTCTCTAGAAAATGCACAGC
ACTGGATACTTCGAAGGTGCTTCATTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_a05.g1 MSMg01no297_a05.g1 CHROMAT_FILE:
MSMg01no297_a05.g1 PHD_FILE: MSMg01no297_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:21 2005
         (576 letters)



>mm_chr7_71842099_71843074
          Length = 976

 Score = 1033 bits (534), Expect = 0.0
 Identities = 571/594 (96%), Gaps = 18/594 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaccttcggattagagtgcttggggcacgcgcatacatgtgcgc------gcgtgtg 54
           ||||||||| |||||||||||||||||||||||||||||||||||||      |||||||
Sbjct: 183 atagacctttggattagagtgcttggggcacgcgcatacatgtgcgcgcgtgtgcgtgtg 242

                                                                       
Query: 55  tgtgtgc------------gtgtgtgtgtgtgtgtgaatgcaaatggttaaataaatgag 102
           |||||||            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgaatgcaaatggttaaataaatgag 302

                                                                       
Query: 103 tgttggtggcaggtggaactgggggacgtctcaagccatcatgggagacaaaaatgaaat 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgttggtggcaggtggaactgggggacgtctcaagccatcatgggagacaaaaatgaaat 362

                                                                       
Query: 163 ctgttctttcagagaaaggtgttgaatggaaaagcaggtacttcaatctctcagcccacg 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgttctttcagagaaaggtgttgaatggaaaagcaggtacttcaatctctcagcccacg 422

                                                                       
Query: 223 gtgtccttaaagcaatgctcttagtcaagacattggaaaaacttctgagagccagttaat 282
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 423 gtgtccttaaagcaatgttcttagccaagacattggaaaaacttctgagagccagttaat 482

                                                                       
Query: 283 gattatattcggttcttttgttgttttgttattattgcttttgtagtcatgcattcatta 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gattatattcggttcttttgttgttttgttattattgcttttgtagtcatgcattcatta 542

                                                                       
Query: 343 ctttgtctgtccatccatggactaatcctgtccagagagagcctagaggacctagctcca 402
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gtttgtctgtccatccatggactaatcctgtccagagagagcctagaggacctagctcca 602

                                                                       
Query: 403 gactgcccaggcccccaggaatgaacgagctgtgtgctcctctggaaggctctgttgggt 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gactgcccaggcccccaggaatgaacgagctgtgtgctcctctggaaggctctgttgggt 662

                                                                       
Query: 463 cttgccatgcagatgagttgtatatcctgttgtctcgagttgctcatctcacactaggaa 522
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 663 cttgccatgcagatgagttgtatatcctgttgtcccgagttgctcatctcacactaggaa 722

                                                                 
Query: 523 ttctgaatttgggccattaacatccactggtgaataaattgagccataaatatc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttctgaatttgggccattaacatccactggtgaataaattgagccataaatatc 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)