BAC Information

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BAC

Clone NameMSMg01-297D15
Chromosome7 (Build37)
Map Location 3,444,391 - 3,606,191
singlet/doubletdoublet
Overlap geneLOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6
Downstream geneLeng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297D15.T7 (MSMg01no297_d15.b1)MSMg01-297D15.TJ (MSMg01no297_d15.g1)
ACCAG424621AG424622
length739739
length of high quality
(start - end)		670 (47 - 716)661 (75 - 735)
definitionCHROMAT_FILE: MSMg01no297_d15.b1 PHD_FILE: MSMg01no297_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:37 2005CHROMAT_FILE: MSMg01no297_d15.g1 PHD_FILE: MSMg01no297_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,444,391 - 3,445,053)(3,605,531 - 3,606,191)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCATTCTTTACACCAAAATCCTCCAGACACTGCCTCCTGCCAAC
TCTCTTCCACTCTCCCTCCTCCCTCCTCCCTCCTCCTTACTTATTCTAAA
AATACACACACCGACACACGCATGTATTTGCAGTTCTTCTGAAATATTTT
GTTGGGTTTTTTCAATTTACATTTTTATTTATTTAACTATTTTCTTTTGG
GGGGAGGGGTGCTGCACATATACCACGATGTGCATACAGAGTGGGGGCCC
AACTTAGGCGGAGGAAGCCCTTTCTCATCAACATGTGTGTTGGTAGCAAG
TTGTCTCTAGCCCTTGAGCAACCCCACTGGCCTAGTTATTTTGGAGACAG
AGTCTCATGGAGCCTCGGCTTGAACTCACTAAGTGACTGAGGATGACCTT
GAACTCCTGATCGTCCTGTCTCCACCTACAGAATGCTGGGATTAGAAGCT
TCCACACCACACAGTGTTTACATGATGCTGAGGACTGAACCCAAAACTTT
GTGTACGCTAGACAAGTGTTCTACTAACTGAGCTATAGCCCACCTTTTTT
TCTGAAAATGTAATTTAACTGGGCATCTTGTAGTTTCATGGGAAGTCTGA
TCACTCGATTTGCAGAGGCTCCCTGAATCTGCTGCACTGATACCAGTGTG
CTACAGTGGGAGAAGATGGATGCAGAGGGGTTGCATAGN

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGTGCCGCATACTGCCTTCCTCT
CTCAGGAAGTGCTTCCTGCAGTCAGTGCAGCACAGGCAGTCTGACTTTCT
GATCACTTCTCAGGCTATTTGGGTCCTCAAGAGACCAAAGAGTCCTCAGT
TCAAAAGCCCACCTCTCATACTTCCTAACTTCTTGCCACAGTTCCCTGTG
TGACCTGCCCACAGTACCACCTAGTCTTCCTCTATAAGCCAGACAACAGG
CCACCTCAACCACACCACCAGTCATCTCCCTACCCTCAGAGTAGCACTGT
TTCTGGCACACCTGTCCCAAGAGCCCAGCATTGTGGCCAACCGTCCAGCT
TCAGTAACTTTGGAGACCACGCAATAAACAAGTTACAAACCATCAGATTT
AGACTTGGACCCACCTGGCTGACTTCACTATCTGTAGATCGGCCTCTCTT
CTTATCATCTTCAGAGTTTTCCTGAGGCAGGGGAAGTGAAGTAAAAAAAC
TCTGTGACCTCCAGGGTCCCAAAACAGAGGGCAATCCTTTAAGGACACAG
GAGGGCCCTTACTACTCTCAGTCTCTCATAGACCCATCTGAGTAGCCCTG
TGCTCCAGAGCTGCTCCAATACTCAGCCTGAAGTTTTGGTTAACACCTAA
AAATCTGAGAGTCAGCACTCACTCCCATCCTGAGACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_d15.b1 MSMg01no297_d15.b1 CHROMAT_FILE:
MSMg01no297_d15.b1 PHD_FILE: MSMg01no297_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:37 2005
         (670 letters)



>mm_chr7_3444188_3445253
          Length = 1066

 Score = 1193 bits (617), Expect = 0.0
 Identities = 655/669 (97%), Gaps = 8/669 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctcattcttta-caccaaaatcctccagacactgcctcctgccaactctcttcc 62
           ||||||||||||| | | | ||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 204 gaattcctcattcctgatccccaaa-tcctccagacactgcctcctgccaactctct-cc 261

                                                                       
Query: 63  actc-tccctcctccctcctccctcctccttacttattctaaaaatacacacaccgacac 121
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -ctcctccctcctccctcctccctcctccttacttattctaaaaatacacacaccgacac 320

                                                                       
Query: 122 acgcatgtatttgcagttcttctgaaatattttgttgggttttttcaatttacattttta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgcatgtatttgcagttcttctgaaatattttgttgggttttttcaatttacattttta 380

                                                                       
Query: 182 tttatttaactattttcttttggggggaggggtgctgcacatataccacgatgtgcatac 241
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttaactattttcttt---ggggaggggtgctgcacatataccacgatgtgcatac 437

                                                                       
Query: 242 agagtgggggcccaacttaggcggaggaagccctttctcatcaacatgtgtgttggtagc 301
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 438 agagtgggggcccaacttaggcggaggaagccctttctcaacaacatgtgtgttggtagc 497

                                                                       
Query: 302 aagttgtctctagcccttgagcaaccccactggcctagttattttggagacagagtctca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagttgtctctagcccttgagcaaccccactggcctagttattttggagacagagtctca 557

                                                                       
Query: 362 tggagcctcggcttgaactcactaagtgactgaggatgaccttgaactcctgatcgtcct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tggagcctcggcttgaactcactaagtgactgaggatgaccttgaactcctgatcgtcct 617

                                                                       
Query: 422 gtctccacctacagaatgctgggattagaagcttccacaccacacagtgtttacatgatg 481
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 gtctccacctacagaatgctgggattagaagcttccacgccacacagtgtttacatgatg 677

                                                                       
Query: 482 ctgaggactgaacccaaaactttgtgtacgctagacaagtgttctactaactgagctata 541
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 678 ctgaggactgaacccaaaactttgtgtatgctagacaagtgttctactaactgagctata 737

                                                                       
Query: 542 gcccacctttttttctgaaaatgtaatttaactgggcatcttgtagtttcatgggaagtc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcccacctttttttctgaaaatgtaatttaactgggcatcttgtagtttcatgggaagtc 797

                                                                       
Query: 602 tgatcactcgatttgcagaggctccctgaatctgctgcactgataccagtgtgctacagt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgatcactcgatttgcagaggctccctgaatctgctgcactgataccagtgtgctacagt 857

                    
Query: 662 gggagaaga 670
           |||||||||
Sbjct: 858 gggagaaga 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1066
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1056
Effective search space:   696960
Effective search space used:   696960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no297_d15.g1 MSMg01no297_d15.g1 CHROMAT_FILE:
MSMg01no297_d15.g1 PHD_FILE: MSMg01no297_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:37 2005
         (661 letters)



>mm_chr7_3605331_3606391
          Length = 1061

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagtgccgcatactgccttcctctctcaggaagtgcttcctgcagtcagtgcagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agaagtgccgcatactgccttcctctctcaggaagtgcttcctgcagtcagtgcagcaca 802

                                                                       
Query: 61  ggcagtctgactttctgatcacttctcaggctatttgggtcctcaagagaccaaagagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcagtctgactttctgatcacttctcaggctatttgggtcctcaagagaccaaagagtc 742

                                                                       
Query: 121 ctcagttcaaaagcccacctctcatacttcctaacttcttgccacagttccctgtgtgac 180
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcagtccaacagcccacctctcatacttcctaacttcttgccacagttccctgtgtgac 682

                                                                       
Query: 181 ctgcccacagtaccacctagtcttcctctataagccagacaacaggccacctcaaccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcccacagtaccacctagtcttcctctataagccagacaacaggccacctcaaccaca 622

                                                                       
Query: 241 ccaccagtcatctccctaccctcagagtagcactgtttctggcacacctgtcccaagagc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaccagtcatcaccctaccctcagagtagcactgtttctggcacacctgtcccaagagc 562

                                                                       
Query: 301 ccagcattgtggccaaccgtccagcttcagtaactttggagaccacgcaataaacaagtt 360
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagcatcgtggccaaccctccagcttcagtaactttggagaccacgcaataaacaagtt 502

                                                                       
Query: 361 acaaaccatcagatttagacttggacccacctggctgacttcactatctgtagatcggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaccatcagatttagacttggacccacctggctgacttcactatctgtagatcggcc 442

                                                                       
Query: 421 tctcttcttatcatcttcagagttttcctgaggcaggggaagtgaagtaaaaaaactctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttcttatcatcttcagagttttcctgaggcaggggaagtgaagtaaaaaaactctg 382

                                                                       
Query: 481 tgacctccagggtcccaaaacagagggcaatcctttaaggacacaggagggcccttacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacctccagggtcccaaaacagagggcaatcctttaaggacacaggagggcccttacta 322

                                                                       
Query: 541 ctctcagtctctcatagacccatctgagtagccctgtgctccagagctgctccaatactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcagtctctcatagacccatctgagtagccctgtgctccagagctgctccaatactc 262

                                                                       
Query: 601 agcctgaagttttggttaacacctaaaaatctgagagtcagcactcactcccatcctgag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctgaagttttggttaacacctaaaaatctgagagtcagcactcactcccatcctgag 202

            
Query: 661 a 661
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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