Query= MSMg01no297_l20.b1 MSMg01no297_l20.b1 CHROMAT_FILE:
MSMg01no297_l20.b1 PHD_FILE: MSMg01no297_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:15 2005
(700 letters)
>mm_chr7_148491989_148493088
Length = 1100
Score = 1237 bits (640), Expect = 0.0
Identities = 688/712 (96%), Gaps = 16/712 (2%)
Strand = Plus / Plus
Query: 4 gaattccaaaggcccttcctccagcaccatggctgtccctttaaggcagcagctctgctt 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaaaggccctttgtccagcaccatggctgtccctttaaggcagcagctctgctt 263
Query: 64 ttgcaggtgtggcctccacaggttacacagaggatgagagggaagctggctggtatccgg 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcaggcgtggcctccacaggttacacagaggatgagagggaagctggctggtatccgg 323
Query: 124 acgctggaagaagctgccagaacctggcctacataaacacctgaagcctgataactgaaa 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acgctggaagaaactgccagaacctggcctacataaacacctgaagcctgataactgaaa 383
Query: 184 gtaggaaagctgggggctagagagctggctcaccgggtaagagcactggctgctctacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaggaaagctgggggctagagagctggctcaccgggtaagagcactggctgctctacta 443
Query: 244 caggaccagagttcaattctcagcacccacatagcaacacaactgtctataactccagtt 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 caggaccagagttcaattctcagcacccacatggcaacacaactgtctataactccagtt 503
Query: 304 tcaagggatctgacaccctcacacagccagacacacagaacaccaatatataaaaaaata 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 tcaagggatctgacaccctcacacagccagacacacaaaacaccaatatataaaaaaata 563
Query: 364 aaagtaggtaaatcattaaacaaaacaaaacaaaaacaaaaacatgtgctagagagatag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 aaagtaggtaaatcattaaacaaaacaaaacaaaaacaaaaacatgtgctagagagatgg 623
Query: 424 ctcagtggttaagaacactgactactcttccagaggtcctgagttcaattcccagcaacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcagtggttaagaacactgactactcttccagaggtcctgagttcaattcccagcaacc 683
Query: 484 acatggtggctcacaaccatctgtaatgagatctgacgtcctcttctggtgtgtctgaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acatggtggctcacaaccatctgtaatgagatctgacgtcctcttctggtgtgtctgaag 743
Query: 544 acagctacagtgtatgtatttataataaaataaataaatctttttaaaaaatctaagctg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acagctacagtgtatgtatttataataaaataaataaatctttttaaaaaatctaagctg 803
Query: 604 ttaaaaaaaaagtatgacagctgtgtgctatgtgttgca-gctgtgtgct--at------ 654
|||||||||| |||||||||||||||||||||||||||| ||| |||||| ||
Sbjct: 804 ttaaaaaaaa-gtatgacagctgtgtgctatgtgttgcatgctctgtgctgcatgttgca 862
Query: 655 ------atactgcatgctgtatgttgtgcactgagtgctctgtattgtgtgc 700
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgccgtatactgcatgctgtatgttgtgcactgagtgctctgtattgtgtgc 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_l20.g1 MSMg01no297_l20.g1 CHROMAT_FILE:
MSMg01no297_l20.g1 PHD_FILE: MSMg01no297_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:15 2005
(669 letters)
>mm_chr7_148654297_148655365
Length = 1069
Score = 1263 bits (653), Expect = 0.0
Identities = 665/669 (99%)
Strand = Plus / Minus
Query: 1 cccatcctgggcctagaggaacggggaggaggtcagatggcctgaagcaccaggcctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cccatcctgggcctagaggaacggggaggaggtcagatggcctgaagcaccaggcctcca 810
Query: 61 aataggaagaaagctatctaccaacggagacaggaggagatccagcagtccccggatgat 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agtaggaagaaagctatctaccaacggagacaggaggagatccagcagtccccggatgat 750
Query: 121 tgcagtttggagctcagccagctatctgccctcagaggagcattcccaggaaccttatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgcagtttggagctcagccagctatctgccctcagaggagcattcccaggaaccttatga 690
Query: 181 gtcacttcctggactaacctcctcacagccagacacatggtgggttatcatggaggaccc 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtcacttcctgaactaacctcctcacagccagacacatggtgggttatcatggaggaccc 630
Query: 241 cccaacatctgctgactcactcctgctggcaacagggggggaagctccagcagaccttca 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 629 cccaacatctgctgactcactcctgctggcaacagggggggaagcaccagcagaccttca 570
Query: 301 gggtacattcctgttgatcggcacccccaagcattccctgagtcccacaatcaggctgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggtacattcctgttgatcggcacccccaagcattccctgagtcccacaatcaggctgct 510
Query: 361 aggtacttaccactcatacccgttcccagatatggcagagagctcaggccaccctaaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggtacttaccactcatacccgttcccagatatggcagagagctcaggccaccctaaggg 450
Query: 421 acagtttgtgaggactctgagctgactctactaccagccagggcagagacaataagatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acagtttgtgaggactctgagctgactctactaccagccagggcagagacaataagatgc 390
Query: 481 cggtaggtggagcctgcacaaccagctctcctcccgactgtagggggaggtcccagttcc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cggtaggtggagcctgtacaaccagctctcctcccgactgtagggggaggtcccagttcc 330
Query: 541 acatatgtgaatgtgccactcctccaggagtcccctagtcacaccctgccctagacacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acatatgtgaatgtgccactcctccaggagtcccctagtcacaccctgccctagacacac 270
Query: 601 tattgtctgactgaggacagtgtacagacctcggctgacgcaggtcagattcccagacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tattgtctgactgaggacagtgtacagacctcggctgacgcaggtcagattcccagacac 210
Query: 661 acacctaag 669
|||||||||
Sbjct: 209 acacctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
