Query= MSMg01no298_b07.b1 MSMg01no298_b07.b1 CHROMAT_FILE:
MSMg01no298_b07.b1 PHD_FILE: MSMg01no298_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:41 2005
(551 letters)
>mm_chr7_73620855_73621805
Length = 951
Score = 816 bits (422), Expect = 0.0
Identities = 509/542 (93%), Gaps = 11/542 (2%)
Strand = Plus / Minus
Query: 4 gaattcttcccatg--cctcttggcagagcctggctccctgtacagttggtcagggacat 61
||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 gaattcttcccgtggac--cttggcagagcctggctccctgcacagttggtcagggacat 504
Query: 62 atgcagaaaaggcatgtggaggtcagccccgcacagtaacacccagagagaaggcagaca 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 503 atgcagaaaaggcatgtggaggtcagccccgcacagtgacacccagagagaaggcagaca 444
Query: 122 cgctgatctagagacatattactgacataaggtcagagccccatgctccccatcgcttgg 181
|||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 443 cgctgaactagagacataccactgacatgaggtcagaaccccatgctccccatcgcttgg 384
Query: 182 cttcatccaagccaggacagaactatgggacacctagactatccaggcctgaccaccaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttcatccaagccaggacagaactatgggacacctagactatccaggcctgaccaccaag 324
Query: 242 agcccttgcctgcctgtagagtctacaagaataattcaagcaggtttttaattgtggagt 301
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 323 agcccttgcctgcctgtagagtctacaagaagaattcaagcagacttttaattgtggagg 264
Query: 302 gctttcaaaattttttaaccagagtgctattcatttttactttttttttcctctttggca 361
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 gcttttaaaattttttaactagagtgctatttatttttactttttttttcctctttggca 204
Query: 362 tgtgtgtatgtatgttgttcatgtgtgtgcatgtgtcatccaggtgtgtggtgcatgccc 421
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtgtatatgtgtgttgttcatgtgtgtgcatgtgtcatccaggtgtgtggtgcatgccc 144
Query: 422 gtgtgtgtaaaggacagaagccaacat-agaatgcctcttcaattctttagtttctcttc 480
||||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct: 143 atgtgtgtgaaggacagaagccaacatca-aatgcctctttaattctttagtttctcttt 85
Query: 481 accatgtgtatgctcagctcatacctctctctctctctctctctctctctctctctctct 540
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 84 accatgtgtatgctca-----tacctctctctctctctctctctctctctctctttctct 30
Query: 541 ct 542
||
Sbjct: 29 ct 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_b07.g1 MSMg01no298_b07.g1 CHROMAT_FILE:
MSMg01no298_b07.g1 PHD_FILE: MSMg01no298_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:41 2005
(466 letters)
>mm_chr7_73464960_73465825
Length = 866
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%)
Strand = Plus / Plus
Query: 1 cacagaggtgaaatcgtagccaggcaatttggagtcccagtcacaggaggcgactcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaggtgaaatcgtagccaggcaatttggagtcccagtcacaggaggcgactcacag 260
Query: 61 acactggctgggttaaagccaactccaactgatgagaagggatcagtcacagagagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactggctgggttaaagccaactccaactgatgagaagggatcagtcacagagagtgat 320
Query: 121 gatctattctggatttaaactttctggttgctttgctttttattgctgtgttttgttgag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctattctggatttaaactttctggttgctttgctttttattgctgtgttttgttgag 380
Query: 181 agggtgtctccctctgttgtctagctgttctggaactcctaggctcaattctcctgcccc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtgtctccctctgttgcctagctgttctggaactcctaggctcaattctcctgcccc 440
Query: 241 agcctcccaattggtgggaattcaggaatgaccttcacccactttagtgacctttaaaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctctcaattggtgggaattcaggaatgaccttcacccactttagtgacctttaaaaa 500
Query: 301 taggttcatttaaaaaatgccctttattataaataactttactgtttaaatgcattcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggttcatttaaaaaatgccctttattataaataactttactgtttaaatgcattcatg 560
Query: 361 ttgtatccagttatacatctctctatttggaagtacacgtttaacacttggaaacaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtatccagttatacatctctctatttggaagtacacgtttaacacttggaaacaccaa 620
Query: 421 ccatctccctgatttttataatcaatgagtacctctaatattgatg 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatctccctgatttttataatcaatgagtacctctaatattgatg 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
