BAC Information

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BAC

Clone NameMSMg01-298D02
Chromosome7 (Build37)
Map Location 104,540,131 - 104,578,469
singlet/doubletdoublet
Overlap geneAlg8, Ndufc2, Thrsp
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
Downstream geneKctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298D02.T7 (MSMg01no298_d02.b1)MSMg01-298D02.TJ (MSMg01no298_d02.g1)
ACCAG425313AG425314
length732741
length of high quality
(start - end)
415 (70 - 484)304 (75 - 378)
definitionCHROMAT_FILE: MSMg01no298_d02.b1 PHD_FILE: MSMg01no298_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:49 2005CHROMAT_FILE: MSMg01no298_d02.g1 PHD_FILE: MSMg01no298_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,540,131 - 104,540,545)(104,578,166 - 104,578,469)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACTCCTCTTTCACCTCCTGGAAGCTGAAGTACCCCTTCATCCCT
TTGCTGCTGACCTCGGTGTACTGTGCAGTGGGCATCACATACGCCTGGAC
CAGGCTGTATGCTTCAGTGTTGACTGGCTCCCTTGTCAGCAAGACAAAGA
AACATTGAATAAAGAAGTGTTTGGGTGAAGGCCAAGCAATTACTTCATGG
GTATTAATCAGAACTTGAAGAAAGTTGCCAGTGGCAGGATCTATTTATTT
AGTAGATCCGTTGAAGGACCATTCTTCCACACTTGGCCTTGCCCTGCCTA
GCAACCTGATTGTTTCCATGGTGAGGAGCCACTTGCCCTCTATAAGCAAC
AAAACACTTTTGAGAAAACTCTCACCTTCCTCTGTAAAAATAGTCTGCAA
TTGTTGAAACTGCTGTGTCCACTGAGGGTGAACCGGGGTGGGTGGGTGAA
AAGTGGCATAATTTTCTGTGGCTGGTACTGACCATTGTTAGGATATAGTG
CATAACTAGATTCTGTACCTAACGAAATATAAATAAAATGTCATTCCACA
TTTATGCATCTCATAGCAAAGTGTTCTGTGTCCATGCCAGCTTTCACATT
CACTTTCCTGTTGGCACGCATATGTTAAGACCGTGAACCGTCTCTGTTCC
GTAAACCTTGCCTCAGTAACGTGGTTTTATCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTACTAGGCTTCCACACTGAGAGC
AGAGACCAGGAATTGGCCTCCTGCCAGAGACTTTGAGACTTTGAGAAAAT
TTACTTCACAAAGAAAGCTTGGCGGTGGGGGGTTGGGGAGGCTAGTAGGG
AGGGAGCAATCCGGATTTTAGATGGTTAAAACCGTTTACCAAGGGTGGAA
CCGAAATTCAAGGTGACTCTAAATAGCATGGGCAATTGAGACTGGCACCA
CACCCTGTCACATGTTTATTCACTCTTAAAATTTGAATTGTACTGTTTTA
AATGTTCATGTACACACACACACACACACACACACACACACACACACATG
CACATTTATGTCCTTGTCTGGCATCGTAGGGCTTTTCTTGCACTCTGGAA
GGTCTTTCTCTTTTTTGTCTTTGTTTTTGTCCCAGTCTTCCCAGTGCTGT
GCTGCTAGGTGCGGGCCACCATTCCTGGTTTGCAGCATCCTTTCCCCCTA
GCACTGTGAATGGATCCCGAGGATTCACACCCTACCAAATGTAGCAACAA
TTCTAATTTTGGAGTGCTATTTAATTGAGTGCGTGTGTCCATGGGTGTCT
TTTGGGCGCCCCCTTCAGGTTTTACGTGTTTAATCTTTGACCAGGCTCAT
TCAGAAGGCAGCTGCGCATTTCCTGTATCTCTGGTGACGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_d02.b1 MSMg01no298_d02.b1 CHROMAT_FILE:
MSMg01no298_d02.b1 PHD_FILE: MSMg01no298_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:49 2005
         (415 letters)



>mm_chr7_104539931_104540745
          Length = 815

 Score =  803 bits (415), Expect = 0.0
 Identities = 415/415 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctggaagctgaagtaccccttcatccctttgctgctgacctcggtgtactgtgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctggaagctgaagtaccccttcatccctttgctgctgacctcggtgtactgtgcagt 260

                                                                       
Query: 61  gggcatcacatacgcctggaccaggctgtatgcttcagtgttgactggctcccttgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcatcacatacgcctggaccaggctgtatgcttcagtgttgactggctcccttgtcag 320

                                                                       
Query: 121 caagacaaagaaacattgaataaagaagtgtttgggtgaaggccaagcaattacttcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagacaaagaaacattgaataaagaagtgtttgggtgaaggccaagcaattacttcatg 380

                                                                       
Query: 181 ggtattaatcagaacttgaagaaagttgccagtggcaggatctatttatttagtagatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtattaatcagaacttgaagaaagttgccagtggcaggatctatttatttagtagatcc 440

                                                                       
Query: 241 gttgaaggaccattcttccacacttggccttgccctgcctagcaacctgattgtttccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgaaggaccattcttccacacttggccttgccctgcctagcaacctgattgtttccat 500

                                                                       
Query: 301 ggtgaggagccacttgccctctataagcaacaaaacacttttgagaaaactctcaccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgaggagccacttgccctctataagcaacaaaacacttttgagaaaactctcaccttc 560

                                                                  
Query: 361 ctctgtaaaaatagtctgcaattgttgaaactgctgtgtccactgagggtgaacc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgtaaaaatagtctgcaattgttgaaactgctgtgtccactgagggtgaacc 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_d02.g1 MSMg01no298_d02.g1 CHROMAT_FILE:
MSMg01no298_d02.g1 PHD_FILE: MSMg01no298_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:49 2005
         (304 letters)



>mm_chr7_104577966_104578669
          Length = 704

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattactaggcttccacactgagagcagagaccaggaattggcctcctgccagagacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aattactaggcttccacactgagagcagagaccaggaattggcctcctgccagagacttt 445

                                                                       
Query: 61  gagactttgagaaaatttacttcacaaagaaagcttggcggtggggggttggggaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagactttgagaaaatttacttcacaaagaaagcttggcggtggggggttggggaggcta 385

                                                                       
Query: 121 gtagggagggagcaatccggattttagatggttaaaaccgtttaccaagggtggaaccga 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtagggagggagcaatctggattttagatggttaaaaccgtttaccaagggtggaaccga 325

                                                                       
Query: 181 aattcaaggtgactctaaatagcatgggcaattgagactggcaccacaccctgtcacatg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 aattcaaggtgactctaaatagcatggggaattgagactggcaccacaccctgtcacatg 265

                                                                       
Query: 241 tttattcactcttaaaatttgaattgtactgttttaaatgttcatgtacacacacacaca 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttattcactcagaaaatttgaattgtactgttttaaatgttcatgtacacacacacaca 205

               
Query: 301 caca 304
           ||||
Sbjct: 204 caca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)