BAC Information

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BAC

Clone NameMSMg01-299F10
Chromosome7 (Build37)
Map Location 58,308,560 - 58,309,171
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774
Downstream geneLOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F10.T7 (MSMg01no299_f10.b1)MSMg01-299F10.TJ (MSMg01no299_f10.g1)
ACCAG426141AG426142
length737733
length of high quality
(start - end)
618 (39 - 656)237 (73 - 309)
definitionCHROMAT_FILE: MSMg01no299_f10.b1 PHD_FILE: MSMg01no299_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005CHROMAT_FILE: MSMg01no299_f10.g1 PHD_FILE: MSMg01no299_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
TCTTGCTTGCCCTAAAGGACAGTAACCCAGAACAGATGGTATGACATGTT
ATAACAAACTGTGACCATGAGTATTGAAAAAAGTTTTGTTTAGTACTATT
CTCTGACCAGTTTGATACCTCCATGTTATCTCTGATTTCTATTTTTATTG
TTATGCAAAGTAAGATCAACACTATAACTGAATACAGATGAACCTTTGTA
CTTAGTGTTGGTATCCTTTTGGTAACTGGCTCTTTCTATTGAGTAGCACA
CCAGGCCAAGGGAAATCTTGAAGAAGACAAAAGATGGCACACAGAAGCTC
CTCAGCTTTGAGGCATAACATGCTAAAGTAGGGCTCAGAGAATACCACAT
ACCTAATGTGGTTCTTCTCATTTGTCTGCCTTTCCAGGTTGCTTGATTAA
ATTCCAAGCTATTTCTGAGGTTGTCTTTCAACAATCTACTTCTTAAGTGA
AGCCTTTCACTGTGCTCTATTATATTTGATCCTCCTTAACTGATTAGGAA
ATGAGAGTACCTGTTGACCAAGCAGCCTACTCAATCTCAGAGTTAGAACA
GGAGCTTGTTTGTGAATCAAGAACTTCATTCCAGAAATCAAAGCAACCAT
ATCTGAGTCAGAGCAGGGGATGAGATCCATTGAGAACATAATGATTTGAT
TCTAGCTAGCTCTCATGTGCTCCCTCTGATAAATTGN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGGATGTGGGNGAACNANA
GAAGGTTACAGGAGTAATCTGNTTAAAGCTCTAAGTTTTTTAATTGGATT
ATTTAGGTTTTTGATATTTTTGATATTGTGTTTTGCATATTAGTCCTCTA
TCAGATGTAAAGTTGGTAAAAATCATTTCCCTTTTTGTGTAAATTGTCAC
ATTCTCTGAATGGCAGTGTCCTTTGCTGCAGAAAAGCTTTTGAGTTTCTT
ATTGCTGACCTTGGAGCCTCTGCTAACTGTGTTCTACTCAGAAAGACTTT
TCCTGCGCTTATTTGTTCCTTAATATNCCACACTTTCTCTTCTATCAGGG
TCAGTTTATCTGCCCCCACCCCGACGTCTTTGATTCATTTGGAGTTGAGT
TTTATGCAGAGCGCTGAGTATTGAATTTATTGAATCAGAGTCCTTTGGGG
GTCCTGTAGTTCTGCAATGAGAGCTAAGCCAGCTTCACACTTTACCTTGG
GCCTCTTTTGCTTTTTTCTCTTGATTTCTGGAATTATAGGTGGCCATCAA
TTTTGCCCAAATTCTACATGGTTCTGAGCACTCTGAACTCTGATCTTCAC
GCTTTCACAGCCTGTCTTGCACCTACAGATCCCCTTTGGGGATCACCATT
TTTTTTTTTTATATAAAGCCCTAGGCCCCTATTACCGATTTTTCGCCCCT
TTGCCTGCAATATTACTTGATTCTGTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f10.b1 MSMg01no299_f10.b1 CHROMAT_FILE:
MSMg01no299_f10.b1 PHD_FILE: MSMg01no299_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:14 2005
         (618 letters)



>mm_chr7_58308354_58309371
          Length = 1018

 Score = 1122 bits (580), Expect = 0.0
 Identities = 604/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcttgcttgccctaaaggacagtaacccagaacagatggtatgacatgttataa 66
           ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattttcttgcttggcttaaaggacagtaacccagaacagatggtatgacatgttataa 266

                                                                       
Query: 67  caaactgtgaccatgagtattgaaaaaagttttgtttagtactattctctgaccagtttg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaactgtgaccatgagtattgaaaaaagttttgtttagtactattctctgaccagtttg 326

                                                                       
Query: 127 atacctccatgttatctctgatttctatttttattgttatgcaaagtaagatcaacacta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atacctccatgttatctctgatttctatttttattgttatgcaaagtaagatcaacacta 386

                                                                       
Query: 187 taactgaatacagatgaacctttgtacttagtgttggtatccttttggtaactggctctt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taactgaatacagatgaacctttgtacttagtgttggtatccttttggtaactggctctt 446

                                                                       
Query: 247 tctattgagtagcacaccaggccaagggaaatcttgaagaagacaaaagatggcacacag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctattgagtagcacaccaggccaagggaaatcttgaagaagacaaaagatggcacacag 506

                                                                       
Query: 307 aagctcctcagctttgaggcataacatgctaaagtagggctcagagaataccacatacct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagctcctcagctttgaggcataacatgctaaagtagggctcagagaataccacatacct 566

                                                                       
Query: 367 aatgtggttcttctcatttgtctgcctttccaggttgcttgattaaattccaagctattt 426
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 567 aatgtggttcttctcatttgtctgcctttccaggttgcttgattaaattccaggctattt 626

                                                                       
Query: 427 ctgaggttgtctttcaacaatctacttcttaagtgaagcctttcactgtgctctattata 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 ctgaggttgtctttcaacaatctacttcttaagtgaagcctttcactgtgctctgttata 686

                                                                       
Query: 487 tttgatcctccttaactgattaggaaatgagagtacctgttgaccaagcagcctactcaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttgatcctccttaactgattaggaaatgagagtacctgttgaccaagcagcctactcaa 746

                                                                       
Query: 547 tctcagagttagaacaggagcttgtttgtgaatcaagaacttcattccagaaatcaaagc 606
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 747 cctcagagttagaacaggagcttgtctgtgaatcaagaacttcattccagaaatcaaagc 806

                       
Query: 607 aaccatatctga 618
           ||| ||||||||
Sbjct: 807 aacaatatctga 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)