BAC Information

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BAC

Clone NameMSMg01-301B05
Chromosome7 (Build37)
Map Location 96,536,788 - 96,537,460
singlet/doubletsinglet
Overlap genenone
Upstream geneRab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
Downstream geneFzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301B05.T7 (MSMg01no301_b05.b1)MSMg01-301B05.TJ (MSMg01no301_b05.g1)
ACCAG427377AG427378
length769769
length of high quality
(start - end)
325 (38 - 362)667 (68 - 734)
definitionCHROMAT_FILE: MSMg01no301_b05.b1 PHD_FILE: MSMg01no301_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:23 2005CHROMAT_FILE: MSMg01no301_b05.g1 PHD_FILE: MSMg01no301_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAA
AATGCAAAGGAGGCAGGGGATGTGTTTGAATGCTAATTCTCAACTGGATG
ATTCTGGAATGACTCCTCTCTCTCTCTCTCCTTGTTTTTTTGAGACAGGG
TTTCTCTGTATAGTCCTGGCTATCCTGGAAATCATTCTGTAGACCAGGCT
GGCCTTGAACTTGGAAATCTGCCTGCCTCTGCCTTCCAAGTGATGGGATT
AAAGGCATGCACTGCCTGGCTGTAACTTTCTTCCTTCCTCCTTCTCTTCC
TTCCTTTCTTCCTTTTGTTTTCTTTTTTTCTCTTGTTTGTTTTGAGAAAA
ATTCCCATGTATTCCAAGATGAGCTCAAACTCACTAAATAGATGAGGATG
ACGTGGAATTCCTCACTCTCCCACTTCTGCCTCCCAAATGTTGGGATTAT
GGGTGTGTGCCATTACTGCAGGCTTAGCTATTTCCCCATCTGACTCAGCT
CCATTCCGTTCTAGAAGAAGCCCCAGTACTCTCATCACATGGAATAGCAT
CTACTTCTCTAAAAGCATGGAACTTTAGAAGCATAGAACTGGGCATATGT
TAGATGATTCCAAGTGCTAAAAAGACACAAACTCAAATAACATAGTTTTC
TATATTCCCTAAGTTATTCACTCTTTAATTTTTCAAAACTTTTTCTGATT
CTTTAGAGTCAGGAACAAAACCTCTCAATTTGGTGATAATACATTTGTAG
CTCCCTACTGCTCCCTAGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAAAGAACTGTGGAGTTAAGAACTTAAGCTC
ATGACCTGGGTGTTGACATTTTTTTTAAGTAGACACATGGACCCATTGAT
TCATGCAATCAACACAAATGTGTTGATTCCCCTGCCTTGGGCCTGGTATT
AGCCATGTGCTGATGGTACCTCAAGCAAACACAAAGCAGTGAACTTCTCT
CCTTTCAGTCAGAGAACTTAAGAAAAGGTGCAGCCCCGAAGCTTCATTTC
TATCTCTGGTGTCTTGACCTGTCTGAGCAATTGACAGTAGTAAAGCAGGG
CCCTCTACTCTCCTTTACAAGCCTCCCCCACCGTTGTGTAAACAGAGGCA
GATTTCCCTCCCAGTCCTCATTATTTTTTAACCTCTGTTCATCTCTTTAG
TTGGCGACATTTTCTATCTACTCGGCAGAACTGCTGAGATAATTAAAAGT
AATGTAGGTTAAGTGCCTAACATAAACCATGACAGCTACTTTAGTAAGAA
ATGGAACAAGACACAGAAGTTGTCCAATACAAAGTATTAATTTGGCAGCT
CTTTGACTCCGATCCAAAACTCAAAGAGCTGATGTTCCAGAAGAGGACTG
TTAAATGGATATGGGGATTAATTATTTCCCCTGACTTCCTTCTCAGCTTC
TGTCACAAAAGCCCTATGTATGCAAGCTTTCCTGTTCTCTCCGCAGAGCT
CTACATGTGTCTACTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_b05.g1 MSMg01no301_b05.g1 CHROMAT_FILE:
MSMg01no301_b05.g1 PHD_FILE: MSMg01no301_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:23 2005
         (667 letters)



>mm_chr7_96536594_96537660
          Length = 1067

 Score = 1236 bits (639), Expect = 0.0
 Identities = 662/673 (98%), Gaps = 6/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagaactgtggagttaagaacttaagctcatgacctgggtgttgacatttttttt- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 195 cagaaagaactgtggagttaagaacttaagctcatgacctgggtgttgacattttttttt 254

                                                                       
Query: 60  -----aagtagacacatggacccattgattcatgcaatcaacacaaatgtgttgattccc 114
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttttaagtagacacatggacccattgattcatgcaatcaacacaaatgtgttgattccc 314

                                                                       
Query: 115 ctgccttgggcctggtattagccatgtgctgatggtacctcaagcaaacacaaagcagtg 174
           |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgctttgggtctggtattagtcatgtgctgatggtacctcaagcaaacacaaagcagtg 374

                                                                       
Query: 175 aacttctctcctttcagtcagagaacttaagaaaaggtgcagccccgaagcttcatttct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aacttctctcctttcagtcagagaacttaagaaaaggtgcagccccgaagcttcatttct 434

                                                                       
Query: 235 atctctggtgtcttgacctgtctgagcaattgacagtagtaaagcagggccctctactct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atctctggtgtcttgacctgtctgagcaattgacagtagtaaagcagggccctctactct 494

                                                                       
Query: 295 cctttacaagcctcccccaccgttgtgtaaacagaggcagatttccctcccagtcctcat 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cctttacaagcctcccccaccgttgtgtaaacagaggcagatttccctcccagtcctcat 554

                                                                       
Query: 355 tattttttaacctctgttcatctctttagttggcgacattttctatctactcggcagaac 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tattttttaacctctgttcatctctttagttggcgacattttctatctactcggcagaac 614

                                                                       
Query: 415 tgctgagataattaaaagtaatgtaggttaagtgcctaacataaaccatgacagctactt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgctgagataattaaaagtaatgtaggttaagtgcctaacataaaccatgacagctactt 674

                                                                       
Query: 475 tagtaagaaatggaacaagacacagaagttgtccaatacaaagtattaatttggcagctc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagtaagaaatggaacaagacacagaagttgtccaatacaaagtattaatttggcagctc 734

                                                                       
Query: 535 tttgactccgatccaaaactcaaagagctgatgttccagaagaggactgttaaatggata 594
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 735 tttgactccgatccaaaactcaaagagctgatgttccagaggaggactgttaaatggata 794

                                                                       
Query: 595 tggggattaattatttcccctgacttccttctcagcttctgtcacaaaagccctatgtat 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 795 tggggattaattatttcccctgacttccttctcagcttctgtcacaaaagccctgtgtat 854

                        
Query: 655 gcaagctttcctg 667
           |||||||||||||
Sbjct: 855 gcaagctttcctg 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)