Query= MSMg01no301_c03.b1 MSMg01no301_c03.b1 CHROMAT_FILE:
MSMg01no301_c03.b1 PHD_FILE: MSMg01no301_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:27 2005
(322 letters)
>mm_chr7_122458264_122458984
Length = 721
Score = 594 bits (307), Expect = e-174
Identities = 316/319 (99%), Gaps = 1/319 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattacatagttttgcaatgaaattatcacactgtgcttgggacatctgcactc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattacatagttttgcaatgaaattatcacactgtgcttgggacatctgcactc 263
Query: 64 tgtcatacatctttctactccatttctagttaatttaatcccaatatctgcccacatgat 123
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcatacatcattctattc-atttctagttaatttaatcccaatatctgcccacatgat 322
Query: 124 aagacagatgttcagctacgctgcggcttcaatggctttctgccttgaagaaagttgaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagacagatgttcagctacgctgcggcttcaatggctttctgccttgaagaaagttgaag 382
Query: 184 ccgttgaaagaaatgacatctatcagacggtgcgcttacagtactaaaagttggggtgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccgttgaaagaaatgacatctatcagacggtgcgcttacagtactaaaagttggggtgtt 442
Query: 244 tgcctcttcgctgtcattagcttcattatttgttggtctatcgcagtaacctctgccatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcctcttcgctgtcattagcttcattatttgttggtctatcgcagtaacctctgccatg 502
Query: 304 aggatcaacacgaggctgt 322
|||||||||||||||||||
Sbjct: 503 aggatcaacacgaggctgt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space: 222856
Effective search space used: 222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_c03.g1 MSMg01no301_c03.g1 CHROMAT_FILE:
MSMg01no301_c03.g1 PHD_FILE: MSMg01no301_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:27 2005
(531 letters)
>mm_chr7_122495323_122496254
Length = 932
Score = 903 bits (467), Expect = 0.0
Identities = 515/537 (95%), Gaps = 13/537 (2%)
Strand = Plus / Minus
Query: 1 aagttgaagtctgcagacatgggaagttgaagtatgtgtcctgtgccccacaactatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagttgaagtctgcagacatgggaagttgaagtatgtgtcctgtgccccacaactatgga 496
Query: 61 tatcagatgccccattaataagactttatcttatggagataactgggaaaaatccaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatcagatgccccattaataagactttatcttatggagataactgggaaaaatccaaggt 436
Query: 121 gagtgtgcttgatggagaatcaagtgaaacaaaccagtaccatagaaagagaagcacatg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 435 gagtgtgcttgatggagaatcaagtgaaacaaaccagtaccatagagagagaagcacatg 376
Query: 181 aacacacatgaacacacatgagcatcagtatgaccacatcacacaaaattgcaaggaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aacacacatgaacacacatgagcatcagtatgaccacatcacacaaaattgcaaggaaac 316
Query: 241 acatgttgc-tttaaagacatgcagatctatttattgttgagcaaaaaacacagtaatct 299
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 315 acatgttgcctttaaagacatgcagatctatttattgttgagcaaatgacacagtaatct 256
Query: 300 gacgttgaattgtctagaagagtggtttatcaaactcttgatgataaatctgtgt----g 355
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 255 gatgttgaattgtctagaagagtggtttatcaaactcttgatgataaatctgtgtacacg 196
Query: 356 tggttgcttcaaatacacgtacttgg-aggctgaaacaggatggttgtcatgattttgag 414
| || |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 195 ta-------cacatacacgtacttgggaggctgaaacaagatggttgtcatgattttgag 143
Query: 415 accagcctgggctatattgtgaataccaggccaggcagagaaaatgaggccagttcaaac 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 accagcctgggctataatgtgaataccaggccaggcagagaaaatgaggccagttcaaac 83
Query: 475 aaacatcttcatagtagaggatctgttgctttatccatttgcctttccaagtctatt 531
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 aaacatcttcatagtggaggatctgttgctttatccatttgcctttccaagtctatt 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
