BAC Information

Click to search

BAC

Clone NameMSMg01-301F04
Chromosome7 (Build37)
Map Location 65,397,594 - 65,397,930
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301F04.T7 (MSMg01no301_f04.b1)MSMg01-301F04.TJ (MSMg01no301_f04.g1)
ACCAG427558AG427559
length734736
length of high quality
(start - end)
569 (42 - 610)534 (73 - 606)
definitionCHROMAT_FILE: MSMg01no301_f04.b1 PHD_FILE: MSMg01no301_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:42 2005CHROMAT_FILE: MSMg01no301_f04.g1 PHD_FILE: MSMg01no301_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATGTTTTCTCTTCAACACCTGATTGTGCTTCTGTAAAGTCAGTAGCC
ATTAATGACCTTGGTTTGGAAACTAGTGCTCTTCTAAGTATTTCTTAATT
ATTCATTGGTTCCTTTACTTTTACTGTGAAGGAGGGGCTTATTGTGCCTT
AGAGACCCTGGAAACAGTCCATTGCGACAGAAAGGTACAGTGGCAGAAGA
AGCAGGCATCTGCAGCTAGGAAGCAAGCAGAGAACAATAGATGTCTGTGC
CAACTCCCTTTCTATTTTCGACTTAGTCCAGAATTCAATCCCATTGATTC
CTGCTGCCTGTATTTAGTATGGTTCTTGCTGCCTTCATTAACATAATCTA
AAGTGTCCAAGAGACATAGTGTGGTGTTTTGATTGATAATGGCTCCCATA
GGTTGATATTTGGGTTCCTATTCTCTAGTAGGTGTAACTGTTTATTAAGG
ATTAGAAGGTATGGCTTTGTTGGAGGTAGTGTGTCACTGGGGAAAAACTT
TGAGATTTCAAATGTTTTCTGCCATTTGCAGTGTGTGCTCTGTTTTCTGC
TTGCTGTTTTAAATGTGGGTTTTCAGCTACTGCTCCAGCCACATGTTACC
TCCACCTCACCTCTACCGCCTGCCTCTGTTCTACCATCAAGACTCCAACC
TCGGGAATCATAAGTCCCAGAGAAACTCTTCTGT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGAGAAGGTTATCTATTCTGTAACAT
TCAACTTACTTCTAGTAGAGACAGTGAAACTAATTAAGTATTACAAAGAA
CATAGCTGGAATAGCTTGGGGCTGGTCTGCAGAGTGTTTGCTTGGGACAA
TAGCCAGTCTTACCCAAACACAATGGCCTAGGTAATAGGTGGGTTTACCA
TGAAAGAATTAGGGAATCCCTCTGAGACAGGAATCTTCACTACAGCCAGG
TATAGCAGGCTACATTGCATATTAGAAGCAAGTTGGTGGATTCTTCTAAC
AAATGGAGGTTCTCCACAGATACTTGAAAGAACAGCCAAGTTACACTCAT
ACAAGAATTTATCAAGGCCTAGGAAATAGGGGGGTTGTGGTATTGCATTA
TTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGTGCTTGCTTTCACAA
GGCTCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTAGCTG
TCATTAAGCTGACCCTAGGCAGGACTGCTTTTTCTTTACTGTAAACATTT
ACCTGGTTCCTGTAAGTTCTTTTGAAGTCATTCCTTTGTTTTGTGTCAAG
TAACTTCAATGTACTTTGTCTGCTGTGCACTCCTACCCCCTTTACTTTCA
GAAAAAACAAACACCGGCGCTTCCCTTTGTCGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_f04.b1 MSMg01no301_f04.b1 CHROMAT_FILE:
MSMg01no301_f04.b1 PHD_FILE: MSMg01no301_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:42 2005
         (569 letters)



>mm_chr7_65397594_65398563
          Length = 970

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatgttttctcttc-aacacctgattgtgcttctgtaaagtcagtagccatta 63
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 337 gaattcttatgttttctcttcaaacacctgattgtgcttctgtaaagtcactagccatta 278

                                                                       
Query: 64  atgaccttggtttggaaactagtgctcttctaagtatttcttaattattcattggttcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgaccttggtttggaaactagtgctcttctaagtatttcttaattattcattggttcct 218

                                                                       
Query: 124 ttacttttactgtgaaggaggggcttattgtgccttagagaccctggaaacagtccattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttacttttactgtgaaggaggggcttattgtgccttagagaccctggaaacagtccattg 158

                                                                       
Query: 184 cgacagaaaggtacagtggcagaagaagcaggcatctgcagctaggaagcaagcagagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgacagaaaggtacagtggcagaagaagcaggcatctgcagctaggaagcaagcagagaa 98

                                                                       
Query: 244 caatagatgtctgtgccaactccctttctattttcgacttagtccagaattcaatcccat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  caatagatgtctgtgccaactccctttctattttcgacttagtccagaattcaatcccat 38

                                                
Query: 304 tgattcctgctgcctgtatttagtatggttcttgctg 340
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tgattcctgctgcctgtatttagtatggttcttgctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)