BAC Information

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BAC

Clone NameMSMg01-301F08
Chromosome7 (Build37)
Map Location 142,182,142 - 142,383,164
singlet/doubletdoublet
Overlap geneDock1
Upstream geneAdam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, B830028B13Rik, EG668693
Downstream geneLOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301F08.T7 (MSMg01no301_f08.b1)MSMg01-301F08.TJ (MSMg01no301_f08.g1)
ACCAG427565AG427566
length740730
length of high quality
(start - end)		592 (67 - 658)312 (380 - 691)
definitionCHROMAT_FILE: MSMg01no301_f08.b1 PHD_FILE: MSMg01no301_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:43 2005CHROMAT_FILE: MSMg01no301_f08.g1 PHD_FILE: MSMg01no301_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,382,573 - 142,383,164)(142,182,142 - 142,182,453)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAACACATACACTGACACTGTGCTGTGATCAGAATATTAGATAATTC
AGGAATTTCTCTCCAGAACACAACCCTGAGCAAAGAAAATGCCAACCCAT
CTGACTTTACAGCAGTGACCTTGGCCGTCTGTTCTTCCACATTTACCTTT
AACTACTGGATGTTGAGTGCAGGGCTTAGCCCTGGGCAGGCAAAGGGGCA
GGAGTCTAGCCAGTCTGTGGGCGGGGATGGCACTCCAATCACAGTAATGG
CAGTGACTGTTGCCAGGATTCGGAGATGATTTGGGGCAATTATTTCCTGT
GCTGAAGGTCAGGAAGGCTTTATAGAGACAAGGTTTGATTTCATCTTTGG
AAGGAGCCTAGAGCCCGGGAACAGCAAGGAAAGGGACAGGTGGTGCAATC
ATACACATATGACATTTATAGTTGTTTGTGTTTATGTCAAATCACACACA
ATAAATAAGTATGCATGCATATAAGCAATATCATCACTTAGAAATACTCA
TGGGTCAGGCAAAAGTTTAAAATAGTCTTAGAATGTTTGGGTCAGATGCT
CAGACCACAAAGTGATGAAATTACAATGCCTAAAAATAAAAATTCAACCA
GGAAATTAAAATGTCTCCACCCCACAGATAACATCTGAGACAAAGGAAAC
CCAGAATTCTATTACAGAATATTTGTGTAAAAATTTTCAN

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGAATGCTGCAGAAGTGATTGGCAT
TTCATTCTTGTCTTTTATTTCCCTGAACTTAATTAAGGAAAAAGCATTTA
AAGCTTGGTTTCTTTTATTCTGGGAAACCTTTTGTCAAGATGTACTTAAT
CATTTAATATAGTTAAAGAAGAAAACAATCTACTGTGTCCCTTAAAACAA
ACAAATTCTGAGGTCAGAAGTGACCCAGGCGCACTCTGATTGGCCTTGAG
CACTATGGAGCAGAATTGGGACTTCTGCCCAGATATCATGCCTTTCCCTG
ATGGTTGCATATTTAGCTCCGTAGTTAATGTCAGTTCTTTCCAAGAAGAT
TGCCCCATCCCTATCTAATTCTACCTTTCTATCCACCTACAGGGGAACTT
TGTGGCTTGCATGACAGCCATTTTACGGCAGATGGAAGACTACCATTATG
CACACCTGATCAAGACCTTTGGGAAAATGAGGACAGATGTCGTGGTGAGT
GTCTTTTCCATCCTGTCACAAGGCCAACATTGGAAGCAGTCAGTGACATC
TGTATTTCCATTTAAAATAGATTTCTGCATAAGAAATTCTCTATTTGATA
TCAGAAGCCACTCAAGACACTGTGTGGATGCTTTTGACTAGCACTGACCT
GNAGAATAACTTGGGTCTGAGCCTGGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_f08.b1 MSMg01no301_f08.b1 CHROMAT_FILE:
MSMg01no301_f08.b1 PHD_FILE: MSMg01no301_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:43 2005
         (592 letters)



>mm_chr7_142382373_142383364
          Length = 992

 Score = 1106 bits (572), Expect = 0.0
 Identities = 587/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacactgtgctgtgatcagaatattagataattcaggaatttctctccagaacacaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gacactgtgctgtgatcagaatattagataattcaggaatttctctccagaacacaaccc 733

                                                                       
Query: 61  tgagcaaagaaaatgccaacccatctgactttacagcagtgaccttggccgtctgttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgagcaaagaaaatgccaacccatctgactttacagcagtgaccttggccgtctgttctt 673

                                                                       
Query: 121 ccacatttacctttaactactggatgttgagtgcagggcttagccctgggcaggcaaagg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 672 ccacatttacctttaactactggatgctgagtgcagggcttagccctgggcaggcaaagg 613

                                                                       
Query: 181 ggcaggagtctagccagtctgtgggcggggatggcactccaatcacagtaatggcagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggcaggagtctagccagtctgtgggcggggatggcactccaatcacagtaatggcagtga 553

                                                                       
Query: 241 ctgttgccaggattcggagatgatttggggcaattatttcctgtgctgaaggtcaggaag 300
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgttaccaggatttggagatgatttggggcaattatttcctgtgctgaaggtcaggaag 493

                                                                       
Query: 301 gctttatagagacaaggtttgatttcatctttggaaggagcctagagcccgggaacagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gctttatagagacaaggtttgatttcatctttggaaggagcctagagcccgggaacagca 433

                                                                       
Query: 361 aggaaagggacaggtggtgcaatcatacacatatgacatttatagttgtttgtgtttatg 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aggaaagggccaggtggtgcaatcatacacatatgacatttatagttgtttgtgtttatg 373

                                                                       
Query: 421 tcaaatcacacacaataaataagtatgcatgcatataagcaatatcatcacttagaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcaaatcacacacaataaataagtatgcatgcatataagcaatatcatcacttagaaata 313

                                                                       
Query: 481 ctcatgggtcaggcaaaagtttaaaatagtcttagaatgtttgggtcagatgctcagacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctcatgggtcaggcaaaagtttaaaatagtcttagaatgtttgggtcagatgctcagacc 253

                                                               
Query: 541 acaaagtgatgaaattacaatgcctaaaaataaaaattcaaccaggaaatta 592
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 252 acaaagtgatgaaattacaatgcctaataataaaaattcaaccaggaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_f08.g1 MSMg01no301_f08.g1 CHROMAT_FILE:
MSMg01no301_f08.g1 PHD_FILE: MSMg01no301_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:43 2005
         (312 letters)



>mm_chr7_142181942_142182653
          Length = 712

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagttctttccaagaagattgccccatccctatctaattctacctttctatccaccta 60
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 201 gtcagttctttccaagaagattgccccttccctacctaattctacctttctatccaccta 260

                                                                       
Query: 61  caggggaactttgtggcttgcatgacagccattttacggcagatggaagactaccattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggggaactttgtggcttgcatgacagccattttacggcagatggaagactaccattat 320

                                                                       
Query: 121 gcacacctgatcaagacctttgggaaaatgaggacagatgtcgtggtgagtgtcttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacctgatcaagacctttgggaaaatgaggacagatgtcgtggtgagtgtcttttcc 380

                                                                       
Query: 181 atcctgtcacaaggccaacattggaagcagtcagtgacatctgtatttccatttaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctgtcacaaggccaacattggaagcagtcagtgacatctgtatttccatttaaaata 440

                                                                       
Query: 241 gatttctgcataagaaattctctatttgatatcagaagccactcaagacactgtgtggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttctgcataagaaattctctatttgatatcagaagccactcaagacactgtgtggat 500

                       
Query: 301 gcttttgactag 312
           ||||||||||||
Sbjct: 501 gcttttgactag 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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