BAC Information

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BAC

Clone NameMSMg01-302C03
Chromosome7 (Build37)
Map Location 85,155,959 - 85,156,280
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C03.T7 (MSMg01no302_c03.b1)MSMg01-302C03.TJ (MSMg01no302_c03.g1)
ACCAG428122AG428123
length743738
length of high quality
(start - end)
325 (40 - 364)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no302_c03.b1 PHD_FILE: MSMg01no302_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005CHROMAT_FILE: MSMg01no302_c03.g1 PHD_FILE: MSMg01no302_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGATACCCTGTAGAGTTTTTTTCCCCCATTGGAATGAAAGAATCCCCCAA
TACTATGTACAACAGCTCTCAGTTTTCCTTCATATACAGATGTATTAATT
TACCCTTGGTTTTGATATTTTTTTACAATTTATCATATAACAATGATCCG
AGATTAAAGCAGTATGTTTGCATTCTTTATTTCACTTTCCTCATGTGCTA
CCAGGAGAGTGGTTTCAACTGGAAACTTAGTTAGCTTTCAGGGCTGAAAC
ACAGTGGGCAAGAGGACGGAGTGTTTAAGACAAGATAAGTGACCACAATG
CTTACTGTTCTTAATGAGACCCTCCGCTCCATTTATTTGTTTGTTTGTTT
GTTTGTTTGTTTATCTTAGTAAATGCTGACAATACTGTTGCATGCCTTTG
GTTATTCCCCTAAGTTCTACACCAGTCACTTGACCCCTCCCCCTCCCCAT
GTCATTGCCTCACTGACTATATGAGAGGAGACATTGCAGAGAGCAGCACC
CCACAATTCTTACTAACTTCCACAGCTGTTTGAGTATTTTTGTAACAGGA
ATACCATAGCACTCTAAAGACACCATAGGGTCTTGTTGTGGGGGGGAAGG
GGGCGGGGATCATATGTGCAAATAGAATAGAACAGTGCTGAATATGAGTC
ATCCTTTCTACTCAAATTGTTGCTCAAGAACAATGAGCATGGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAGTGGTTGTACAAGTTTGTACTCCCACCA
TTATTGGTGGACTGTTCCCCTTGCTCCACACCCTCACCAGTATGTGATTT
CCCTTATGGTCTTTTTCCCCCTTAATCTTAGCTATTCTGACGGGTGTAAT
CTCAGTATTGTTTTGATTTGTTTCCCTAATGAGTAAGGACATTGAACATT
TCTTTAAGTGCTTCTTGTCCATTAGAGATCACTCTGCTGAAAATCCTATG
TTTAGTTCTGTGCCCCATTTTTAATTGGGTTATTTGGGTTGTTGATGTCT
AACACCTTTTTTTTTTTCCCCCCCCCCCATATTAGCCTTCTATCAAATGG
AGGGTTGATAAAGATCTCTTCACAAACATTACAGTGTCCTGTGGGCCTAT
TGACATTTTCCTTGCCTTACAGAAGCTTTTCAGTTTCATAAGGTCCAATT
TGTTAATTGTTGATCTTAGTGCCTGAGCCATTGATATTCTCTTCAGGACT
TTGTCTTCTGTACCCATGATTTCAAGGATATTCCCTAATTTTTGGTCTAT
TAGATTAAGTGTGTCTGGTTTTATGTTGAGGTCTTTGATCCACTCGTACT
TGTGTTTTGTGCAGCGTGATAAATATGGATCCATTTGTATTCTTCTACCT
GCCAATTTTGTTAGACCTGCCCAATTTTTTAAAGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c03.b1 MSMg01no302_c03.b1 CHROMAT_FILE:
MSMg01no302_c03.b1 PHD_FILE: MSMg01no302_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:42 2005
         (325 letters)



>mm_chr7_85155755_85156480
          Length = 726

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagataccctgtagagtttttttcccccattggaatgaaagaatcccccaatac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 526 gaattcaagatacactgtagagtttttttcccccattggaatgaaagaatcgcccaatac 467

                                                                       
Query: 65  tatgtac-aacagctctcagttttccttcatatacagatgtattaatttacccttggttt 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatgtacaaacagctctcagttttccttcatatacagatgtattaatttacccttggttt 407

                                                                       
Query: 124 tgatatttttttacaatttatcatataacaatgatccgagattaaagcagtatgtttgca 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 406 tgatatttttttacaatttatcatataacaatgatccgagattaatgcagtatgtttgca 347

                                                                       
Query: 184 ttctttatttcactttcctcatgtgctaccaggagagtggtttcaactggaaacttagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttctttatttcactttcctcatgtgctaccaggagagtggtttcaactggaaacttagtt 287

                                                                       
Query: 244 agctttcagggctgaaacacagtgggcaagaggacggagtgtttaagacaagataagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agctttcagggctgaaacacagtgggcaagaggacggagtgtttaagacaagataagtga 227

                                 
Query: 304 ccacaatgcttactgttcttaa 325
           ||||||||||||||||||||||
Sbjct: 226 ccacaatgcttactgttcttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 726
Length adjustment: 9
Effective length of query: 316
Effective length of database: 717
Effective search space:   226572
Effective search space used:   226572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)