BAC Information

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BAC

Clone NameMSMg01-303B17
Chromosome7 (Build37)
Map Location 92,678,569 - 92,678,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
Downstream geneVmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B17.T7 (MSMg01no303_b17.b1)MSMg01-303B17.TJ (MSMg01no303_b17.g1)
ACCAG428794AG428795
length741732
length of high quality
(start - end)
695 (41 - 735)390 (69 - 458)
definitionCHROMAT_FILE: MSMg01no303_b17.b1 PHD_FILE: MSMg01no303_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:55 2005CHROMAT_FILE: MSMg01no303_b17.g1 PHD_FILE: MSMg01no303_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATACCAAAACATAATAAAAGAAATTTACTGCATACCAACAACA
AATATCAAATTAAATGAAAAAACAATCTGCTGCAATTGAGGACAAGACAA
GGATATCCACTCTCCCCATATCTATTCAATATATTACTCAAAGTGTTACC
TAGAACAATAAGACAACAAAAAGAGATCAAGTGGATACAAATAAGAAAGG
AGAAATAAAGGTATCACTATTTTCAGATGAAATGAGAATATGCATAAGTG
ACCCCAAAAATTCTACCAGAGCAATTCTCCAGCTAATAAACAAATTAAAA
AAAAAAAAAACACAGTAGTGAGAAATAAAATTAATACAAATAAACCAATA
GCCTTCCTTTATACAAAGGATAAATAGGCTGAGAAAGAAATTTTGGAAAC
AATTCCCTTCACAATAGCCACAAATAATATAAAATATCTTGGAGTAACAC
TAACAAAACAAGTGAAAGACCTGTATGACAATAACTTCAAGTCACTCAGA
AAGAAATCAAAGAAGATCTCATAAAATGGAGCGATCTCCCTTGCTCATGG
ATTGGCAGAATTAACATGTAAAATGGACATTTTTAGAAAGACAATCTACA
AATTTAATGCAATGCCCATCAAAACCCCAACACAATTCTTCAAAGAGAAT
GATAGAGCAATTCTCAAATTCATCTGGAATTGCAAAAAACC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCCAGCGAGATACTAGCTCGGGCGAGAGGT
GGGCAGCTGCCATCACCCCTTTCCTCTCCCACATTTGGTTCAAACCCCTA
ATTATTCAGTCAGGGAAGCAATCAACCATTAGCAATCGGTGGAACGTGCC
AGACAAGACTGACATTCAGTCTGCCAGAGGTTAGGGTGTGGAAGGGTGAC
ATATGATTACCACGAGGTATAACTGGGGTTAGGGTGGTATCTTAACTCTC
TTGGCCTCTCAATTCTGTTTTGCAGAGAACATTCTAGAGGGAGGCAGGGA
GCCGCTCACAGTGGGCTCTCTGCTTTGCTCTAATACTCAATATTAATAAA
ACATTGCATTACACCCAAGCTCAGAGGAGATAATTGAAGCCATTTTTTCA
CATCTCCAGGGACAGAGAGCGTTGACTCCTGGGTATAGTGGCTGGTGCCT
AGGTAATTTTGAGTAGCCTTGAGGACATGTCCTGCCTAAGGATCTACAGA
AGGACAAGGTTCCTAAAAAAGGGGAGTAAGGCTCAAGGTTGAAAAATTTT
AACCCTCCCCTTTTCCCAAAAACAGGGAAGGAAGGGGCCCTCCCTTTCTG
GTTTCAACCTTTATCCCAAAAAGGGTATGGCCTAAATTGGCCAAAAGGGA
ATAATTCGGAAGAGGTGGGGGCCTCCATTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b17.g1 MSMg01no303_b17.g1 CHROMAT_FILE:
MSMg01no303_b17.g1 PHD_FILE: MSMg01no303_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:55 2005
         (390 letters)



>mm_chr7_92678369_92679158
          Length = 790

 Score =  665 bits (344), Expect = 0.0
 Identities = 379/396 (95%), Gaps = 12/396 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccagcgagatactagctcgggcgagaggtgggcagctgccatcacccctttcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccagcgagatactagctcgggcgagaggtgggcagctgccatcacccctttcctctc 260

                                                                       
Query: 61  ccacatttggttcaaacccctaattattcagtcagggaagcaatcaaccattagcaatcg 120
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 261 ccacatttggttcaaacccctaattattcagttagggaagcaaccaaccattagcaatcg 320

                                                                       
Query: 121 gtggaacgtgccagacaagactgacattcagtctgccagaggttagggtgtggaagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaacgtgccagacaagactgacattcagtctgccagaggttagggtgtggaagggtg 380

                                                                       
Query: 181 acatatgattaccacgaggtataactggggttagggtggtatcttaactctcttggcctc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatatgattgccacgaggtataactggggttagggtggtatcttaactctcttggcctc 440

                                                                       
Query: 241 tcaattctgtttt---gcagagaacattctagagggaggcagggagccgctcacagtggg 297
           |||||||||       ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaattctg----caagcagagaacattctagagggaggcagggagccgctcacagtggg 496

                                                                       
Query: 298 ctctctgctttgctctaatactcaatattaataaaacattgcattacacccaagct---c 354
           |||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |   |
Sbjct: 497 ctctctgctttgctctaatagtcaatattaataaaacattgcattaaacccaa--ttatc 554

                                               
Query: 355 agaggagataattgaagccattttttcacatctcca 390
           ||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaggagataattgaagccattttttcacatctcca 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)