BAC Information

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BAC

Clone NameMSMg01-304G16
Chromosome7 (Build37)
Map Location 152,345,018 - 152,490,869
singlet/doubletdoublet
Overlap gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
Downstream geneMrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304G16.T7 (MSMg01no304_g16.b1)MSMg01-304G16.TJ (MSMg01no304_g16.g1)
ACCAG429704AG429705
length1,3521,273
length of high quality
(start - end)		673 (92 - 764)219 (125 - 343)
definitionCHROMAT_FILE: MSMg01no304_g16.b1 PHD_FILE: MSMg01no304_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:01 2005CHROMAT_FILE: MSMg01no304_g16.g1 PHD_FILE: MSMg01no304_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,345,018 - 152,345,690)(152,490,654 - 152,490,869)
sequence
NNCCCTGTTCNNNNNNNNNACATTGGGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTGCTGCCCTGGCAAGACAGTTAAATTCTCACGGT
GTCACTACCTATGTGCACAAAGAGCGAGGCAGGGAGGAAGTCAGTGGAGC
ACACCATGGTGTGAGGGGGTAGGATACAAGCCTGATCCAATGCATTTTGC
CTAAATCCACTTTGAGTCATGTCTCCTGTCTCTGACCAACATTACTCTTA
GGTATGGAGAAGTTAACTCAAATCCCAGTGGCCTCTGCCTGGCATGCCCA
TCAGGGCTGCCACTGGTCTTCCACATGGCAGCCGGCTGTGCCTCTCTCCC
CAGGCTGCTCAGAGTGAGGGGTGTAATTTATGGTAGGAAGCTCTTAACAG
CATGGGTGCTTTGGGAGAGTCTGTGACAATAGGCATAAAGCCGGCATTTA
ACCAGTGTGAATGGAGCCTAGATTTACTGTCTGGGCCAGACGGGATTTTT
GTCCACAAGTCATCTCGGAGTACATTGACCACTAAAGGCTTCAACAGAAG
ACGAGGACCAAACAAAGGAAGTCAATTTTAAAAGGAACTTTGTCAAGGAG
GTTTAGATGTCCACCAGATAGAAAAGGCGCGGCTGTCCTCTCCGGTGACA
GCCGACCTGCCCAGTTGCAGCAGATCAGAGGGAGATGCTAATGAAGTCGT
TTGAATGCCATTTGATGGACCTAGAGAATAGGACCCATGTCCCCAATCCT
GCAGCAAGGTGAAGGGATCTAAGAAGGTGGTGGCCTTTGGTTTTGCTGCA
GGTACAAGTACCATTTGTCCCAGCTGTCTTTTGCAGCTACAAAGTGTTTT
TTAATTCAGTGCTTTACCACCGAACAATGTGGTTTTATTTTGTGTTTACC
ATCGTAATCTTACCTCTTTGTTTTCTCAATCTCTCTTAATTTTTTTTTAT
TTTCATCTTTTTCATTTAGACATTATATAATTTCTTTTTTTTCTTTTCTT
AACATATTTATTTTAAATTACTATTCTCATTTTCTTCATCCCTTCCATTG
AATTTATATGGTTTTTTCTTCTTTCATCCTTACTTCTCCTTCACTTCCTT
AATATATTTTCTTCTACATCTTTTATTAAATACTTCTTATTACTTATCTT
TTCTTTTCTCATTACTTATGCCTCCTTTCGTTTATATTTTGTCCTTTATA
TACTCTATTTTTCTCTTTATTATTATTTAATATCCTCATTTTTATGATTT
TATCTTTGCTCTTTGTCTTCTACTCTTACTCTCCTCTCTTTCCATCTCTT
TCATAATATAATACTTTACAAACTACATCTTTCAATTTCTTAATCTTTTA
TT

NNNCCCCCCTTTNNNNNATCAAGGAGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGGCTAACATCTTTTGTCC
ACCCCTAAACCAAGCTGCCTAAATCTTTCTCTGCTCCCCTTTCCTGGAGC
TGCTCTGTTGCTGCCCCAGGCCTCTGACTCACTGGACCAGACCCAGATGC
AGAACTTTGTCCTTTGTGGACCAGCTCAGCAGTAGAAGCTGGCCTGCTGG
GACTGGGCAAAGCCCTTTGTGTATCACCTAGCTAGAAAAGTCTGCAGTCC
CTCAATGGGTGTTGGTAGCCTGGGTGGGGGAGTGGGGGTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNNTT
NTTTTCCTTTTTTTTTTTNCCCCCTNTTNTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTT
TTTNTNNTTTTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTNTNNTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNNNTNTTTTTTTTTTTTTTTTTNNNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTNTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTT
TTTTTTTTTTTNNNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTNNNTTNTTTTTTTTTTTTTTTNNTTTTTTT
TTTTNTTTTNNTTNNTTTTNTTNNTNNTTTTTTTTTNNTNTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_g16.b1 MSMg01no304_g16.b1 CHROMAT_FILE:
MSMg01no304_g16.b1 PHD_FILE: MSMg01no304_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:01 2005
         (673 letters)



>mm_chr7_152344818_152345890
          Length = 1073

 Score = 1286 bits (665), Expect = 0.0
 Identities = 671/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcacggtgtcactacctatgtgcacaaagagcgaggcagggaggaagtcagtggagca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tctcacggtgtcactacctatgtgcacaaagagagaggcagggaggaagtcagtggagca 260

                                                                       
Query: 61  caccatggtgtgagggggtaggatacaagcctgatccaatgcattttgcctaaatccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatggtgtgagggggtaggatacaagcctgatccaatgcattttgcctaaatccact 320

                                                                       
Query: 121 ttgagtcatgtctcctgtctctgaccaacattactcttaggtatggagaagttaactcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagtcatgtctcctgtctctgaccaacattactcttaggtatggagaagttaactcaa 380

                                                                       
Query: 181 atcccagtggcctctgcctggcatgcccatcagggctgccactggtcttccacatggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcccagtggcctctgcctggcatgcccatcagggctgccactggtcttccacatggcag 440

                                                                       
Query: 241 ccggctgtgcctctctccccaggctgctcagagtgaggggtgtaatttatggtaggaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggctgtgcctctctccccaggctgctcagagtgaggggtgtaatttatggtaggaagc 500

                                                                       
Query: 301 tcttaacagcatgggtgctttgggagagtctgtgacaataggcataaagccggcatttaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tcttaacagcatgggtgctttgggagagcctgtgacaataggcataaagccggcatttaa 560

                                                                       
Query: 361 ccagtgtgaatggagcctagatttactgtctgggccagacgggatttttgtccacaagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtgtgaatggagcctagatttactgtctgggccagacgggatttttgtccacaagtc 620

                                                                       
Query: 421 atctcggagtacattgaccactaaaggcttcaacagaagacgaggaccaaacaaaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctcggagtacattgaccactaaaggcttcaacagaagacgaggaccaaacaaaggaag 680

                                                                       
Query: 481 tcaattttaaaaggaactttgtcaaggaggtttagatgtccaccagatagaaaaggcgcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaattttaaaaggaactttgtcaaggaggtttagatgtccaccagatagaaaaggcgcg 740

                                                                       
Query: 541 gctgtcctctccggtgacagccgacctgcccagttgcagcagatcagagggagatgctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgtcctctccggtgacagccgacctgcccagttgcagcagatcagagggagatgctaa 800

                                                                       
Query: 601 tgaagtcgtttgaatgccatttgatggacctagagaataggacccatgtccccaatcctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaagtcgtttgaatgccatttgatggacctagagaataggacccatgtccccaatcctg 860

                        
Query: 661 cagcaaggtgaag 673
           |||||||||||||
Sbjct: 861 cagcaaggtgaag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no304_g16.g1 MSMg01no304_g16.g1 CHROMAT_FILE:
MSMg01no304_g16.g1 PHD_FILE: MSMg01no304_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:02 2005
         (219 letters)



>mm_chr7_152490454_152491072
          Length = 619

 Score =  418 bits (216), Expect = e-121
 Identities = 216/216 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctctgctcccctttcctggagctgctctgttgctgccccaggcctctgactcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctttctctgctcccctttcctggagctgctctgttgctgccccaggcctctgactcactg 357

                                                                       
Query: 61  gaccagacccagatgcagaactttgtcctttgtggaccagctcagcagtagaagctggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaccagacccagatgcagaactttgtcctttgtggaccagctcagcagtagaagctggcc 297

                                                                       
Query: 121 tgctgggactgggcaaagccctttgtgtatcacctagctagaaaagtctgcagtccctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgctgggactgggcaaagccctttgtgtatcacctagctagaaaagtctgcagtccctca 237

                                               
Query: 181 atgggtgttggtagcctgggtgggggagtgggggtg 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgggtgttggtagcctgggtgggggagtgggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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