BAC Information

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BAC

Clone NameMSMg01-305A03
Chromosome7 (Build37)
Map Location 142,600,056 - 142,600,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
Downstream geneFoxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305A03.T7 (MSMg01no305_a03.b1)MSMg01-305A03.TJ (MSMg01no305_a03.g1)
ACCAG430117AG430118
length1,2831,310
length of high quality
(start - end)
421 (32 - 452)384 (74 - 457)
definitionCHROMAT_FILE: MSMg01no305_a03.b1 PHD_FILE: MSMg01no305_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:24 2005CHROMAT_FILE: MSMg01no305_a03.g1 PHD_FILE: MSMg01no305_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGGTCACTGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAAT
TCAACTCTGGATATTTGGTATTATGGATGTAGGTTTTAAAGTTTGTTAAA
CATATGTTATATTTTAGACATAGGTACTGTCTTAGTCACTCTTCAGTTAG
TGTGATAAAATTCTCTGAAAAAAAACACAGATGAAATGAGAGAGGGTTTA
TTCCAGCTCACAGCTCAGCAGTCCATCATTATGTGACAGGAGCTTGGAGC
AGCTGGCCATATAATGTTTACCGTCGGGAAGCAGAGAGCAAAGGATGCTT
GCCACTGCTCAGTCCTCTTTCTACACTTAAACAGAGCAAGATCCCAGCTC
AGGAAGTGATAGCACCCAAAATGGGCAGGTCTTCCACCTTCATTTAACAC
AATCAAGAAAACAAGTGCCCTGTGGTATCTCCAGAGGCTCAACCTTCAGG
TGTTTTTTTATCCCCCCCCGCTGACAGCACTAACCATCCTGAAAAAAAAA
GGATTTCTGAATGAGCTTACTTCTCTAGGATTTGTTTTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCGCGCGCGTGTGTGTGTGTTGTGGTTTATTATGA
ACAGACATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATAT
ATATATATATATATGTNNNNNNNNNNNNANNNCNNNNNNNNNNNNTNNNT
NNTTTNTTTTTTNTTTTTTTTTATTATTTTATTNTTNTTTNAATTNATAT
TATAATATTTTTTTTATTTTTTTTTTTTTTTTTTTTTATTATATTATTAT
TAATTTATATATATANATATTTTTTAATTTTTTATTATTTTTATTTAATT
TTTATTTTTTTTTTTTTTTTTTTNNATTNATATTNATTAATATTATTTAT
TTTAATATTTTTAAAATAATNATAAAATATATATATTATTTATTTTATAN
TATTTTTATATATNTTTTTATTATTTTTTTTTTTTAAATAATAATTTTTT
TNATTATTNATATATTAATTTTTTTTAATTTTTATTAATTTAATTAAATT
TNTTATTTTTTAAATTTTTTTTTTATATTATATANNAANNNANNAANAAN
TANAATAAAAATAAATAAATTTTTAATTTATTATAATTTTTATTTTTATA
ATTTTTNATTAATTTTATATAATAAAATTATAATATAAATATATAAATTA
AATTTATTTTTATATATATTAATATATTTTTAATATAAATATTATANTAT
TATTATTTNATTTTATTTTATTTATAATTTTTT
NNNCCGGCTGACGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCTGTAATGATACACAGACATCGG
GTGACACCATCAGTTAACGAGGCAGTATGACAAGGGCAGGAGGAAGTGAG
ATTCCATCTAGCTCAAATTTGGCCTCTGTACTCTGTAGCCTTGGGAAGAG
GTTGGTTAAGTAAAGGCAGTGGCCAGCCAGTGACAACAGCAGTCAGGAAT
GGACTCATGTGGGCTCTCTAGCCAGATGGTGGCCCTGCCTCCCTTCCCCA
GAGGGCTGGTTGGGGGAGCAAGTACCCTCGGATAGCACTGATATCCCCCC
CAAAACACACACACACACACACACACAGAGGGAGAGAGAGAGAGAGACAG
ATATTGAGACGAGACAGAGAGAGACAGAGACATACAAAGACAGATGACAG
AGACATTTTTTTTTCCCCCCCACCAGAGACAGAGAGACCCACATAACAAA
GGGGGAGACNGANAGACAGAGGCAGAGACCCAGTGACGGGAAGCTCTCTG
AGCTTCTCCTCCCTCTCTGGCTTCTCAAGAGGTGTTATCTGTTGTATTTC
CCTAAACAGCACCCAAAGCCACCAGCCTCTCTCTCTAATGAGCCATTTCC
AAGATGTGCTCAAAAATTACAAAACTGTTCTCTGTGGGCTTAAAGTAACC
ACTTTTCGAGGGGAGTTTCTTTCCACCAGCAAGTGTGGTGGTGTTCCTCA
TAGTCCTAGCAAAGGGGCACTCACCCCCCTCCTTACCTGGTCACCTTTTC
TCCACCTGCTGGAATCTTGCTGTAGATGAGGAAGCATCGTTTGACAGCCC
AATCGTCACAAGACAGAGTATCACAGAGGCTACTGCTCTGCCTCAGCCAC
ATGATCCCTGAGACAGTCCACTGTGAAGAGCCCCGCCAGACAGTGGGGTC
ATATGAATCTATTTTTAAAAATTCTGCCTTCCCTGGCTTCTCTGGTGGGA
GGGGGTCTGTCAGAAAATTGGCTGCTCTTTAAGGAAGTGGACCCCGGGGG
TTTATAAGGATTAAACATTTTTCCTTGTCCCTGCGAGGTGGAAGGGAAAA
TTTTATTTTTATCCCCAGTTGGCTTTATAACTGTGGAAAAAACTTTTTCT
CTTCTCCAAAAATTGTTCTCGGGTTAAAATAGGGGGTATTAACACAAGCG
GGCGGGAATAAAAAATTTAATTTATATTGTTTTCTCCCGGTTTACAACCC
AGCGGATTTTTCCTATAATAATAAAAAGCCTCCCCAAAAAGGAGCTGTCT
CTAATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_a03.g1 MSMg01no305_a03.g1 CHROMAT_FILE:
MSMg01no305_a03.g1 PHD_FILE: MSMg01no305_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:24 2005
         (384 letters)



>mm_chr7_142599987_142600770
          Length = 784

 Score =  621 bits (321), Expect = 0.0
 Identities = 366/397 (92%), Gaps = 28/397 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctgtaatgatacacagacatcgggtgacaccatcagttaacgaggcagtatgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttgctgtaatgatacacagacatcgggtgacaccatcagttaacgaggcagtatgacaa 394

                                                                       
Query: 61  gggcaggaggaagtgagattccatctagctcaaatttggcctctgtactctgtagccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gggcaggaggaagtgagattccatctagctcaaatttggcctctgtactctgtagccttg 334

                                                                       
Query: 121 ggaagaggttggttaagtaaaggcagtggccagccagtgacaacagcagtcaggaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggaagaggttggttaagtaaaggcagtggccagccagtgacaacagcagtcaggaatgga 274

                                                                       
Query: 181 ctcatgtgggctctctagccagatggtggccctgcctcccttccccagagggctggttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctcatgtgggctctctagccagatggtggccctgcctcccttccccagagggctggttgg 214

                                                                       
Query: 241 gggagcaagtaccctcggatagcactgatatcccccccaaa--------------acaca 286
           ||||||||||||            |||||||||||||||||              |||||
Sbjct: 213 gggagcaagtac------------ctgatatcccccccaaaacacacacacacacacaca 166

                                                                       
Query: 287 cacacacacacacacacagag-ggagagagagagagagacagatattgagacgagacaga 345
           ||||||||||||||||||||| || |||||||||||||||||| |  |||||||||||||
Sbjct: 165 cacacacacacacacacagagagg-gagagagagagagacagagacagagacgagacaga 107

                                                
Query: 346 gagagacagagacatacaaagacagatgacagagaca 382
           |||||||||||||||||||||||||||||||||||||
Sbjct: 106 gagagacagagacatacaaagacagatgacagagaca 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)