BAC Information

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BAC

Clone NameMSMg01-305A21
Chromosome7 (Build37)
Map Location 68,696,627 - 68,697,024
singlet/doubletsinglet
Overlap geneB230209E15Rik
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305A21.T7 (MSMg01no305_a21.b1)MSMg01-305A21.TJ (MSMg01no305_a21.g1)
ACCAG430148AG430149
length1,2301,213
length of high quality
(start - end)
406 (46 - 451)302 (70 - 371)
definitionCHROMAT_FILE: MSMg01no305_a21.b1 PHD_FILE: MSMg01no305_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:30 2005CHROMAT_FILE: MSMg01no305_a21.g1 PHD_FILE: MSMg01no305_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGCGACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCTTTGACTATCTTTAAAGAATGAAGTATGCAGGTATGCAAT
GACAAACATAGAACTATGTTTGTTCCCAAGAGTAGCAACTTTAACCTGAT
GTTAGAACATGGATTGCAAACTAATGTAAAACATCTGAGACTGTTGATGG
TACAAAGATGATAACAAAGGAGAACTGCAGCATTTAGGATTTAGTACTAT
TTGAGGGCACTGGCATACCAGGTAATGGGATGTTAGAAAATATTTCAGAA
AAACTTCATAGTGACAAGTTATAACTACTGTCCTGGTACAAAAATCTTTT
ACAGATCTGGTCTCCCAAAACAGATTAAGGAGCAAAAAGTTGCCTATCAC
TGTTTTATACTGAAGGCTGATATAATACATGATCCTAGCAGATGAGGNAG
AACTTTTTTGTTGCCCCCCCCCCTTAAAANTGAAGCACTGAAAAAAAAAA
AGGGGGGGTNCCTTGCNCAGCNNACAGGAGCAGTTTCACTCAGAGAAGTA
ATGTGAAGAATCATAGCAAGTTACCTGACCATAATGACGTTTTCTTTTCA
TTTTCATCTGTAGATTTCCAGAGCACCCCATCCTTCTCTGAGAAGCAGCT
GATATTCAATCTCTGGCAAGAGCCTGGCCTGTGCTGCTAGCTAAACACCA
ACCAGGAGCAATACTAGAATTTTTATGTAAATACACTTTATGGCATTGGT
AGCCGCAGAATGGCTTAGTACACTTATAATAATAGAGAAAAGATTTGGGA
ACAATGAATACAGAGATCCCCAAAATGACTAAGAAAGCAAAGCATGTTTC
TTACCATAAAGATTTTGCCATGAAACCTCTCTATATCTCTCACTCCTTCC
TGCCTGTTGGCTCTTGAATACAAATTTAGATGAATTAGAAGGAGAAATAC
CCAATTATTATGGAATTCCTTCCTTGGTTTCTGGCCCCTCAAAAACTGAA
CAAATTGCCTCAAATTTCCTTCCTTTTCCCCTTCCATTTGCTAAAGTTAC
TTATACCATACCCTCTTTCTGGCTTTACATTCCTCCTTTTCTTACCCTGT
CCTACCAATTGTAATACCTGCCTTCCTCCTTCTTATTCCCTCCTCTTTAA
TACCTCCATCCCGTATACTCTATTTTCCTATCTCTTCCCCTTCTCCCTAT
CTTTCTCCCCTTCTTCTCTCTCTCCTCTTC
NNNCCGAGAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAGGGTTTGTAACCCCAGAGGAAGAACAA
CAATATCGAGCAACCAGACCCACTCACAGAGCTCCTAAAGACTAAATCAC
CAACCAATTGAGAGTCCCATGTCTCCAGCTTCATAGCTAGCAGAGGGCAA
CCTTGTCAGACATCAATGGGAGAAGAGACCCTTGGTCCTGAGAAGGCTTG
ATCCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGGTGGATTTGGGTGGGA
GGGTAGGGGAACAGATTAATAGAAGCAGTGAGAGGAATTATTGGATAGGG
GATTTCTGGAGGGGAAGNAGGNAAANGANANGNNANNNGNAANATTTTTT
TTTTTTTANANNNGANAAAAANAGAANAAAGGGGGGGGGGNAAAAAANAA
AATTAATACTTTTCCCCCCCCCCCNAANNNNNNNNNCCCCCAAAAAAAAA
AAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNCNNNNNNNNNNNNNN
CNNNNNNNNNNNCNNNNCNCNNNNNNNNNNNNCNNNNNNNNNNNCNNCCC
CNNNNNCCCCCNNCCNCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCNCCC
CNCCCCCCCCCCCCCCCNNNCCCCCCCCNNCCCCCCCNCCCCCCCCCCCC
CCCCCCCCCCCCNCNNCCCCCCCNCCCCCCCCCCCCNCCCNCCCCNCCCC
CCCCCCNNCCCCCCNNCNCCCNCCCCCCCCCCCCCCNNCNCCCCCCCCCC
CCCCCCCCCCCCCCCNCCCCCCCCNNCCCNCCCCCCNCCCCCCCCCCNCC
CCCNCCCNNCNCCCCCCCCCCCCCCCCCCCNCCCCNCCCCCCCCCNCCCC
CCCCCCCCCCCCCNCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCNNCCC
NCCCCCCCCCCNCCCCNCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCNNNNCCCCCCCCC
CCCNNCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_a21.b1 MSMg01no305_a21.b1 CHROMAT_FILE:
MSMg01no305_a21.b1 PHD_FILE: MSMg01no305_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:30 2005
         (406 letters)



>mm_chr7_68696423_68697228
          Length = 806

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgctttgactatctttaaagaatgaagtatgcaggtatgcaatgacaaacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgctttgactatctttaaagaatgaagtatgcaggtatgcaatgacaaacat 264

                                                                       
Query: 65  agaactatgtttgttcccaagagtagcaactttaacctgatgttagaacatggattgcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaactatgtttgttcccaagagtagcaactttaacctgatgttagaacatggattgcaa 324

                                                                       
Query: 125 actaatgtaaaacatctgagactgttgatggtacaaagatgataacaaaggagaactgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actaatgtaaaacatctgagactgttgatggtacaaagatgataacaaaggagaactgca 384

                                                                       
Query: 185 gcatttaggatttagtactatttgagggcactggcataccaggtaatgggatgttagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatttaggatttagtactatttgagggcactggcataccaggtaatgggatgttagaaa 444

                                                                       
Query: 245 atatttcagaaaaacttcatagtgacaagttataactactgtcctggtacaaaaatcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatttcagaaaaacttcatagtgacaagttataactactgtcctggtacaaaaatcttt 504

                                                                       
Query: 305 tacagatctggtctcccaaaacagattaaggagcaaaaagttgcctatcactgttttata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 505 tacagatctggtctcccaaaacagattaaggagcaaaaagttgcctatcactgtcagata 564

                                                 
Query: 365 ctgaaggctgatataatacatgatcctagcagatgagg 402
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgaaggctgatataatacatgatcctagcagatgagg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)