BAC Information

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BAC

Clone NameMSMg01-305I18
Chromosome7 (Build37)
Map Location 71,395,082 - 71,395,451
singlet/doubletsinglet
Overlap geneTrpm1
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneBB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I18.T7 (MSMg01no305_i18.b1)MSMg01-305I18.TJ (MSMg01no305_i18.g1)
ACCAG430478AG430479
length1,2751,323
length of high quality
(start - end)
423 (30 - 452)289 (512 - 800)
definitionCHROMAT_FILE: MSMg01no305_i18.b1 PHD_FILE: MSMg01no305_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:37 2005CHROMAT_FILE: MSMg01no305_i18.g1 PHD_FILE: MSMg01no305_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCGGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTCTTTAATTTACTC
GATCAATTCATTTCTGGACCATACTTGGCGTTTGATGACTGCTCTTTCTC
TCAGTGATATCTGTGTCTGCCATCAGGTGTGGGTTCGGGTCTGGTCTGCT
GAGGCATGGACCAGACCTTCTCTGTTGCCCAAGTACCTTTGCAACACACA
CCGGGGAGTCTCGGTGCTTTTCCCCTGATGTGCTTACACAGAGCTTTGCA
CGTTAGGCATGTCCCTCCACACAGGGTCTGCTGATCATGTCAGCGTGGGG
ACTCAACTCATGGCTTCCTCCTGATTCTGGGAAATGAACATTAAGTCTTA
TTTTTTACTTTTGTTATCAAATGTCAATATCAACGTTGTAACACCCAACG
TTTTTTTTTTCCCCCCCCCCCCNNANGGNATGCCTCTCTCAAAAAAAAGG
GGGGCCTGAGTTGAAGCAGAGGGTTCAACCCAAAGCACCACCAACTTGCA
CGTCATCTCTCATAGTTCCCTCAAATACAGGCAATGTCTCTGGGGCTCAA
GGTTCCATAAATGGCACCATCATGAAGCTGCTTCGACAAGGCAGAAACTG
AATGTCACCATGATTCCATGTTCCTTACTTTACACTTCTTTGGCTTCTTC
AAGGCACCTTTGTCTTTCTGTCACAGGNGCTCTGCCCATGCCAATCCTTC
TGCCTGGTCTACCTACGCTACCTTCCCTACGCATCCTTTGAATCTCTGCT
CAAAGCCAATGCCATAAGAAAAAGTTTCCCGACCCATAACCACCGTTCAC
TGGCTCCAGGGCATTGAACCTTANGAAGCCATCCAGATGTTCGGATTTTG
CCCACCAAAATATTCCACAAAGTATGACAGAGTTTGATAATGAAAGAATG
TTAAATCTTTCTGAATTTACTACAAATCTCTATCCATTCTTCAGTCCGTC
TGTTGAAGCAAGGATGAAACTCACTTTGGTCCCCCCTGGTTCAATTTTCT
GGGTTTTAATATCCAACTAAAATGGTCAAATCTCATTTCCCTTTCCTTTA
TAAAAAAATATTTGCTTTTGGTGTTTTTTTATAATTACAAAACTTTTCCT
GATTTTATAAAGCGTTTCCTTCTCTTACTTATCACTTTCTATCTCATATA
AGCTAAAAATTCCTTCTCCCTAATATCTTTATTTTATCTTCTTGTCTACA
GATCTTTTCATTATATTACTCATAA
NNAATAAAGAGGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGTTAGTCTAAAAAGAAACCCGAGG
ACTGAAATAGGGAAGTCAATGCAGGATATAAAAATGGAGTTCTAGAAAGA
GATAGATATACCAAAAAACCCAAAGTGAAATTATACTGAGCATGACATTT
TTCAATAAGTCAAATAAAAGAAGGTCAGAGGAAGCCCCACCAATCAGGGC
ATCTTGGGACCGAATACTGGGGCCTGAAGATAAGGTGGAGAAACTGGGAC
ATTTAGTCAGGGGCAATAAACTCAAAGGCACTCAGGAATATAGTATGCAA
GATCCAGGACATAAGACCAATCCATGAATCACAAACATGGAAAGAGAACC
CTATTTTTTTAGTATAGAAAATATTTTCAATACAACCATAGAAGAAATTT
CCTGATTTTTTTTTTCCCCCCCCCCTTGTTTTAAGATTCCTCTAAAAAAA
AAAAGGGGGGAGGATCAGAAAAAAATTGCACATAATATTATATTATGCAT
ATAGAGCAAAAAAAAGTGTTTTGAGAGCTACACTAGAGAAACATTAACTC
ACACAGAGGCAATCCATCAGGATAACAGTTGGTCCTCTCAATACAAACTT
TAAAAGCCATATAGGTAATGAAAGATGTATTTCAAGTCCAGACCACGATG
GCTAACCCAAGATACAATACTCAGCAAAGCTATCACAATTGATAGAAAAA
TAAAAATATTCCACGATAAAAGACTAAAGGAGCTTATAACCACTAAGTTA
GCTCTCTGTGGAAAATTGGCAGGAAATTTTCAGATCAAAGAGACGAANAA
AATACATTTAAGAAGATACACGGAAAAAAAAAAAAGATGCTAAAATTATA
AATGAAAGAGGATTAGGAGGAAAAAAGCTGAACACTACAAAATTCAGCAA
TTGGGTAGAAATTACATATACCTTCCCATGATATCTCTGAATATTAAAAG
TCTCAATTCCCCAGTCTAAGACACAGACTAGGGAATGGATTTTAGGCAGG
GATCCATTAACTGCCTTCAGAAAAATGAACCCTTTGGAAAAAGGGATGAA
AAAACCAGCCCGGCAAAGGACCTTAGGAAGGAAACAGGAAAACGTTTTCC
AAACTTGAAACATATATGTCCACCTTGACTCATATAAAAAAAGAAAAAAC
CTCCTTCTTATCCTTTAGGGGAAAACCCGGAGAGAAAACCCAGGTTCTAA
AATATCACTCAAACTCATCTCCCCCACCTCTAAATGTGGTGAAAAATAAG
AGCCGGGTTCCACCCACAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i18.b1 MSMg01no305_i18.b1 CHROMAT_FILE:
MSMg01no305_i18.b1 PHD_FILE: MSMg01no305_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:37 2005
         (423 letters)



>mm_chr7_71394829_71395651
          Length = 823

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/374 (97%), Gaps = 8/374 (2%)
 Strand = Plus / Plus

                                                                       
Query: 54  cacctctttaatttactcgatcaattcatttctggaccatacttggcgtttgatgactgc 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cacctctttaatttactcgatcaattcatttctggaccatacttggcgtttgatgactgc 313

                                                                       
Query: 114 tctttctctcagtgatatctgtgtctgccatcaggtgtgggttcgggtctggtctgctga 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tctttctctcagtgatatctgtgtctgccatcaggtgtgggttcgggtctggtctgctga 373

                                                                       
Query: 174 ggcatggaccagaccttctctgttgcccaagtacctttgcaacacacaccggggagtctc 233
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 374 ggcatggaccagaccttctctgttgcccgagtacctttgcaacacacaccggggagtctc 433

                                                                       
Query: 234 ggtgcttttcccctgatgtgcttacacagagctttgcacgttaggcatgtccctccacac 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggtgcttttcccctgatgtgcttacacagagctttgcacgttaggcatgtccctccacac 493

                                                                       
Query: 294 agggtctgctgatcatgtcagcgtggggactcaactcatggcttcctcctgattctggga 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agggtctgctgatcatgtcagcgtggggactcaactcatggcttcctcctgattctggga 553

                                                                       
Query: 354 aatgaacattaagtctta----ttttttacttttgttatcaaatgtcaatatcaacgttg 409
           ||||||||||||||| ||    ||    ||||||||||||||||||||||||||||||||
Sbjct: 554 aatgaacattaagtcctaacactt----acttttgttatcaaatgtcaatatcaacgttg 609

                         
Query: 410 taacacccaacgtt 423
           ||||||||||||||
Sbjct: 610 taacacccaacgtt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)