BAC Information

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BAC

Clone NameMSMg01-306H08
Chromosome7 (Build37)
Map Location 52,907,119 - 52,907,361
singlet/doubletsinglet
Overlap geneFut2
Upstream geneMyh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik
Downstream geneSec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306H08.T7 (MSMg01no306_h08.b1)MSMg01-306H08.TJ (MSMg01no306_h08.g1)
ACCAG431114AG431115
length737721
length of high quality
(start - end)		---242 (57 - 298)
definitionCHROMAT_FILE: MSMg01no306_h08.b1 PHD_FILE: MSMg01no306_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:15 2005CHROMAT_FILE: MSMg01no306_h08.g1 PHD_FILE: MSMg01no306_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCGAAGTACCCTCTATAAGGGAGTATACTGGTGGGTATAACCCTT
GGACCCAAGGACTCTGCTCTCTGTAGGGGCCCCACAAAAAGCCCTCATTC
CCCCAAGGTCGGAGACACAGTATCCAGCATCCACTCCTCCATTTTTCGTT
TGATTCCACACATCCATTTTGACTGCCTGTTTACTTTAGGCTCATTTGAC
CAAATCTCACGCTGTAGATTTGGATGTCCTGAAGGTTGATCTGTAGAACA
GGGTGACGATGAAGTCGATCAGTTCTGACTGACTCTGCGACCTGGGCGAT
GGGACTAAAGGTGTCACTCCGGGGCTCTTCGTCGGTTGTTCAGGGAATAT
TCGTTGAGTTCCTCGAAAGTGATAGGTCTACTGCCAGATGCCCATGAACG
CATGCACTTGTAATTTGCACTGTAGAAGGACAGTAAAGAACCACCGATGT
TGCTGAAAGTTGCGCATGTGCATGGCTGTTGAGCCCTGGGAAGATGGATT
ATCAAACCCTGAGTTTGTTGTGCCAGCAGGAAAACGCATGTTAGAGCCTG
TAACGATGGAACTGACAGAAATAAGATACTGACACTCATAGGAGGTCCCA
TGTTAGCCAAACTCTCTGATAGACGATCTCGGAATTTCAGAAGACGATCG
GGATGGAGAGATAATGTTAGGAGGAACGATGTAACTN

TGGCGGCCGCCTGGTTCGGACGAGGAGGTGACACTATAGATATTACAAAA
AAATTCCAGCACAATTAGTAATGTGGTGAGAAGGTTGTCCATAGGTAGTA
ATACCTATACATATTTAGGATAATATTATTTATATATACATATTTTAGGC
TAAGTAACAGTACACCGGGCTTAAGGCCTGAATGTATATGGCCAAGGGCA
GGCTTCATTCTACATTGCCTGAGAAGGTCCCAGAGCATCTTCTTTTTCAC
ACATCCCTTTTCCTTTCTCCACTGGTTGATGGAGATAAATTAGTTCCTGC
TTTGTTTAGTGGTACCGGCCTGTGATCCCAGCTACTGGTTAGTTTGACGC
CGCACAGCTACAAGTCTACTAAGTGAGTTCCAGGCCAACCAATGCTACCT
ACAGAAACTGTCTCAAACAAAACATAACAAAGTAACAGAGTGGTTGAGGA
GATGACCCAGTGCTAAAAAACACTTGCTGCTTTTCAGAGGACTGCAGTTT
AGTTTCTGGCACCCATATGTGGTAGCTCATAGCAACCTGTACCTCCAGCT
TCAGAGTAAATGTTCCCCACTGGCCTTTGTAGACTCTGCACAAACATGCA
CACGCATGCGTGCTCATACACCCACTCTCACACCCCGATTATTTACCACC
TCTTATAATACATTAACCATATCTATCTGCATCCCGGGTGATGCCCTCCA
TTTGACCACCCCTAATGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_h08.g1 MSMg01no306_h08.g1 CHROMAT_FILE:
MSMg01no306_h08.g1 PHD_FILE: MSMg01no306_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:15 2005
         (242 letters)



>mm_chr7_52906921_52907562
          Length = 642

 Score =  420 bits (217), Expect = e-122
 Identities = 236/245 (96%), Gaps = 6/245 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcacaattagtaatgtggtgagaaggttgtccataggtagta----atacctatacat 56
           ||||||||||||||||||||| ||||||||||||||||||||||    |||  |||||||
Sbjct: 199 cagcacaattagtaatgtggtaagaaggttgtccataggtagtaatatata--tatacat 256

                                                                       
Query: 57  atttaggataatattatttatatatacatattttaggctaagtaacagtacaccgggctt 116
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atttaagctaatattatttatatatacatattttaggctaagtaacagtacaccgggctt 316

                                                                       
Query: 117 aaggcctgaatgtatatggccaagggcaggcttcattctacattgcctgagaaggtccca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaggcctgaatgtatatggccaagggcaggcttcattctacattgcctgagaaggtccca 376

                                                                       
Query: 177 gagcatcttctttttcacacatcccttttcctttctccactggttgatggagataaatta 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagcatcttctttttcacacatcccttttcctttctccactggttgatggagataaatta 436

                
Query: 237 gttcc 241
           |||||
Sbjct: 437 gttcc 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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