BAC Information

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BAC

Clone NameMSMg01-306M10
Chromosome7 (Build37)
Map Location 52,406,392 - 52,407,042
singlet/doubletsinglet
Overlap geneAldh16a1
Upstream geneKlk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l
Downstream genePih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306M10.T7 (MSMg01no306_m10.b1)MSMg01-306M10.TJ (MSMg01no306_m10.g1)
ACCAG431340AG431341
length7681,197
length of high quality
(start - end)		656 (44 - 699)---
definitionCHROMAT_FILE: MSMg01no306_m10.b1 PHD_FILE: MSMg01no306_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:39 2005CHROMAT_FILE: MSMg01no306_m10.g1 PHD_FILE: MSMg01no306_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTGGATCACTTGTCTTGGCTACTTTGGGAAAGCTCTTGGTGTCCA
ATAGGCCCGTGGCCTGTCAGCACCCCGTTGACATTCTTGTGGGAGTTTGT
TTTCCGTCTTTTCCACAGCAGTTGATGTTAGGAACTCCCATGCATCCATC
ACTGAGCTTCAACAGCTCTGCGAGGGCAGGCCAGTGTTGACTGCGCTTTC
TCCCTTTCTCTCGAGAGTCGTTTATACAGTGCCGGCTGTTGTGCTACTTT
CACATAAATATTTGAGTCCTTATTTCTAACAGATAAGGATTGTTATACAA
CCAACACTGCCATAGCACTAACTGTCAGTCACAGTGCTTAGTTCCCGGTT
CATGTTCACATGGCCCCACTTCACGATGGCTCTGTTCCAGTTTGGAACAT
TTGCATGACAATTTCTCTTTTCTTTTTAAAAGATTTGGTTCTTTTTTGTT
TGTTTTGTTTGCATTTTGGGACAGGGTTTCTCTATGTAGTCCTTCCTGGC
TGGCCTGGAATGTTCCACGTAGACAGTCTGACCTGAACTCACAAGCAGTT
TACCTGCCTCCCACGTGCACCCCTTGTTCTGTAAGACTACTGTGTCTGTG
TGTATGCATGCGCGCACACGCTATGTGTGTCCCAGGAGCTGGAGCTGCAG
GTGGCTGTGAGCTGTCTGAAAACCAAACATGTAGCCTGCAGGAGCCCTTT
ACTCTGGAGTCAGCTCTN

NNNNNCCCTTTTTTTCCTTTTTTNCTTTTTTGTGGNGCGTGTTCCCTNNN
TTGTGGTGGTGGTTTGTGGTGGGGATGTATGGTGTGGGGGGTTTTGCTGG
GCGCCTGCTGGTGTTTGTGCGTGGTGGTTTGGTTGTGGTTTGTGTTGGGT
TGGGTCGTGGGGGTGTTGTGTTTGTGTGGGGGGAGGGCGGGTGGTTTTTG
TGCCCCTCGTCTGTGGGGGGGTGGGGTTTGTGTTCGTGGTGGGGTGGGTT
GGGTTGTGGGTGTGGGTGGGGGGTGGTTGGTGGTGGTTGTGTGTGGTGGG
GGTGGGTGGGGTGGGGTGGGTGGTGGTGTGCTTTGGTGTTGGGGTTTGTT
TTTTGTTTGCGTTGTTGTTTTTGCGTGGGGTGTTGTTTGGTTGTGGGGCT
GGTTGGTGTGTTGGTTGGGTTTGGGGTCGGTGTGTGTGTGGTGGTGCGGG
TGTGGTTTGTGGTGTGGGGCCGACAGGGGGGTGTTTTTTTTTGTTTTTGT
GTGGGGTGTGGTGGTGGGCGAGGTCGGGTGGCNAGGGGGGGGGGGTGTGG
GGGGGTGAAGNGGCTTGNAGGGGGACGGNGGAAGACTGTTGTTGTGTGTT
GTTTTGTTTTGTTGGTGGGGGTTTGGTGTTGTGNTTTGGGGGTGGTGTGT
ATTATAAGAAATAATAAAATATTTTATTGGGGGGGGGTTTTTGCCTCTTG
GGTGGTGGTTTTTTCTCTTCTTTCTTTTTTTTTTTTTGGTGTGGTTGGTG
GTTGTGGTGCGGTTTGGTTTTGGTTGTTTTGTTGGTTGTGTTTGTTTGTG
TGGTGTGGGTTGTGTTTGCGTGTTGGTTTTGTTGGTGGTGTGTGTGGTTG
GTTGGGTGGGGGTTACGTTTGTGGTGGGGGGTGTTTTTTGTTGGTTGTGT
CTTGCGTGTTTTTCTGTTGTGTGTGTTTTGTTTTTTTGTTGTGGCGTCTG
TGTGTTTTTGTTGGGTTTCGTGGTGGTGTTTGTTTGGGTGAGTCGGTTTG
TTGTGTTGGTGTTGGGCGTGGGTGTGGTTGTTTGGTGTGGTGTTTGTGTT
AGGTATTGCGCGTGGCGTGTGTGTGTGTGTTGGTGGGTGTTGTGTGTTGG
TGGTGTGGTGGTTGTCGAGTTTTTTGTGTTGGTGGGGGTCGTTGTGGGTT
GCGTTGTGTCGGTGTGGGTGTGGGGTGCTGGTTGGTTGGTGTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_m10.b1 MSMg01no306_m10.b1 CHROMAT_FILE:
MSMg01no306_m10.b1 PHD_FILE: MSMg01no306_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:39 2005
         (656 letters)



>mm_chr7_52406383_52407439
          Length = 1057

 Score = 1174 bits (607), Expect = 0.0
 Identities = 641/653 (98%), Gaps = 3/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgg-atcacttgtcttggctactttgggaaagctcttggtgtccaataggc 63
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattcatctggaaccaattgtcttggctactttgggaaagctcttggtgtccaataggc 601

                                                                       
Query: 64  ccgtggcctgtcagcaccccgttgacattcttgtgggagtttgttttccgtcttttccac 123
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccgtggcctgccaggaccccgttgacattcttgtgggagtttgttttccgtcttttccac 541

                                                                       
Query: 124 agcagttgatgttaggaactcccatgcatccatcactgagcttcaacagctctgcgaggg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 agcagttgatgttaggaactcccatgcatccatcactgagcttcaacagctctgtgaggg 481

                                                                       
Query: 184 caggccagtgttgactgcgctttctccctttctctcgagagtcgtttatacagtgccggc 243
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caggccagtgttggcggcgctttctccctttctctcgagagtcgtttatacagtgccggc 421

                                                                       
Query: 244 tgttgtgctactttcacataaatatttgagtccttatttctaacagataaggattgttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgttgtgctactttcacataaatatttgagtccttatttctaacagataaggattgttat 361

                                                                       
Query: 304 acaaccaacactgccatagcactaactgtcagtcacagtgcttagttcccggttcatgtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acaaccaacactgccatagcactaactgtcagtcacagtgcttagttcccggttcatgtt 301

                                                                       
Query: 364 cacatggccccacttcacgatggctctgttccagtttggaacatttgcatgacaatttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cacatggccccacttcacgatggctctgttccagtttggaacatttgcatgacaatttct 241

                                                                       
Query: 424 cttttctttttaaaagatttggttcttttttgtttgttttgtttgcattttgggacaggg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttttctttttaaaagatttggttcttttttgtttgttttgtttgcattttgggacaggg 181

                                                                       
Query: 484 tttctctatgtagtccttcctggctggcctggaatgttccacgtagacagtctgacctga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tttctctatgtagtccttcctggctggcctggaatgttccacgtagacagtctgacctga 121

                                                                       
Query: 544 actcacaagcagtttacctgcctcccacgtgcaccccttgttctgtaagactactgtgtc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 actcacaagcagtttacctgcctcccacgtgcaccccttgttctgtaagactactgtgtc 61

                                                                
Query: 604 tgtgtgtatgcatgcgcgcacacgctatgtgtgtcccaggagctggagctgca 656
           |||||||||||||||||  ||||||||||||||| |||||| |||||||||||
Sbjct: 60  tgtgtgtatgcatgcgc--acacgctatgtgtgttccaggaactggagctgca 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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