BAC Information

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BAC

Clone NameMSMg01-309A01
Chromosome7 (Build37)
Map Location 37,888,345 - 37,888,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneLOC100043874, Zfp536, LOC100043453, EG627844, C80913, Ccne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309A01.T7 (MSMg01no309_a01.b1)MSMg01-309A01.TJ (MSMg01no309_a01.g1)
ACCAG432921AG432922
length710727
length of high quality
(start - end)
316 (36 - 351)594 (77 - 670)
definitionCHROMAT_FILE: MSMg01no309_a01.b1 PHD_FILE: MSMg01no309_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:28 2005CHROMAT_FILE: MSMg01no309_a01.g1 PHD_FILE: MSMg01no309_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAC
CTCTCATTACATGGAAGGCAAGGAGAGAGAGAGAGGTCCTGGTTAGGAAT
TAGTCAGCATCTGTAGCTTGCCAAAGGGACACAGCAGTCGGCCACCAGCT
AACAGGACCTCTGACCAGCACGGATGACCCTGTGTGCTAATGAGAAAGGA
AAATGATATCTACCTATATGTTTGGGACACACACCCACAGGGAAGCGTAC
CTGCTTCCCTGCTGTCTTTTCTGTCTGCTGGGTGTTTATTATTTTATGAT
CTCCCTGGATCACCACCTCTGCTCTCTCTGCAGCACCCTGTCAGCACTCT
CCTCTGAAGTGTTGACCTGCGCGATGTTCACAGGACACTCTGGCCACTAT
TGGCCAAGCACTCGTTGGTCTGTATGACAAGCAGGCATGTCCGCATCACG
ACAGTTCTCTGATGAGTAAAAACTCCTAGGCTCACAGTAAGTGTGGGTCT
CATCCACCAGAACACCGCTTCAGGGGTCCAATGTCACTTTGAGAATGGAA
AATGTCTCCGGATGTGACAAGCATTTAACTTGTCTTACCTTATACAGATC
CCCCCAGCTAAATATTGCGTTTGCTCATGACTTGATTGACATACCATTGC
GATGTATGTGTTCATTCTCCATTCTCATCCTGAGGTCAGAATGTATGTCT
TATTTTTCTC
CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTGATGAAAATTAATAACTGC
AACCTGCGTGCTATTGGGGGTGGGAATGCATGCCCACTGCAGTCAGGCTG
AAGGGCGTTGACTGACCTGCTTGAAAAACAAAGTCCAGACAGTGAAAGGC
ACAGTACAAAAGCTTCTTTTGGGGAAGTCCAGGTACTCCATTCAATTGTA
AATCAGCAATGATCAGGCCAGACTTAGAGCTCCCGGTGTGGGGGAGGTGG
TTTTGAGAATTGCAGAAAGTCTTACAGCTTCCCTGGGAGTGGCGGCTGTG
CTCTAATTTAACTTTTTGGCTAAAGAGGATTTTTAGCCATGATCAAGGTT
AGAGTCATACTTACTAGAAGATTAAGGATCTGTGTCTAGTTGTCGAACTA
ATCTCTCAGGCAGCCATCGCGCTCCATCTTCTTTTTGTGAAAAAACACAG
ACATTCCCAGAAAAATCAGAGACTTTTCCCTTTCCCAGATTAGGACCGGG
TCTGGAACCTTCCATTCGTTACTTAATGGGTCCTGCCACGGCATATATAC
CATGGCATATAAACTAGAAGTAACTAGATGCCAGTGGCGATCCACTGCAG
ACTGACCTTTAACATCAGTTTGCAAAAAAATTAGAACAAATAAAGCAAAA
GCAAGATGTGCCTTTGGTGACCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_a01.b1 MSMg01no309_a01.b1 CHROMAT_FILE:
MSMg01no309_a01.b1 PHD_FILE: MSMg01no309_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:28 2005
         (316 letters)



>mm_chr7_37888141_37888856
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacctctcattacatggaaggcaaggagagagagagaggtcctggttaggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacctctcattacatggaaggcaaggagagagagagaggtcctggttaggaa 264

                                                                       
Query: 65  ttagtcagcatctgtagcttgccaaagggacacagcagtcggccaccagctaacaggacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagtcagcatctgtagcttgccaaagggacacagcagtcggccaccagctaacaggacc 324

                                                                       
Query: 125 tctgaccagcacggatgaccctgtgtgctaatgagaaaggaaaatgatatctacctatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgaccagcacggatgaccctgtgtgctaatgagaaaggaaaatgatatctacctatat 384

                                                                       
Query: 185 gtttgggacacacacccacagggaagcgtacctgcttccctgctgtcttttctgtctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttgggacacacacccacagggaagcgtacctgcttccctgctgtcttttctgtctgct 444

                                                                       
Query: 245 gggtgtttattattttatgatctccctggatcaccacctctgctctctctgcagcaccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggtgtttattattttatgatctccctggatcaccacctctgctctctctgcagcaccct 504

                       
Query: 305 gtcagcactctc 316
           ||||||||||||
Sbjct: 505 gtcagcactctc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)