BAC Information

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BAC

Clone NameMSMg01-309P08
Chromosome7 (Build37)
Map Location 132,597,615 - 132,772,803
singlet/doubletdoublet
Overlap geneJmjd5, Nsmce1, EG244214, Il4ra, Il21r
Upstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014
Downstream geneGtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309P08.T7 (MSMg01no309_p08.b1)MSMg01-309P08.TJ (MSMg01no309_p08.g1)
ACCAG433599AG433600
length748761
length of high quality
(start - end)
312 (36 - 347)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no309_p08.b1 PHD_FILE: MSMg01no309_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:40 2005CHROMAT_FILE: MSMg01no309_p08.g1 PHD_FILE: MSMg01no309_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,772,495 - 132,772,803)(132,597,615 - 132,597,955)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCT
CTCCAAGCCTTAGTTTCCTCTTCTATAAAATGTGGCAATGGCTTTCCCTT
CAGAGTTAGGAGTCAAATGCACCATCAGAAGAAGCAACCCCCTCACAATG
ATGAGTGGTTGCAACTGGGGATGTATAACTGAGCACAGACCTCCCAGCCA
TGCTGAGAATCTTAGGGCTTGTGAAGCAGCAGCAGGACCAGCTTTAGTAC
CAGGAGTGGGGTGTCCTACCAGCATCACACTTACCCCCAGCCTGGGTCTG
AAAGATGACGGTTTCACTCCACTCACTCCAGGTCCCCCTGAATGAAGTGT
CAGTTATACCCCCCTCCCAGCCCCTGCAGCTGGTATCTAGAATCTTTGTG
GAACTCTCCCCCAAAAAAAAAAAAGTTTCTTGTGTCGGCGGAGATCAGTT
TGGTCACCGGCCTCTGCCAGGACAGAAGAACCATGACACTCTGTAGTCTC
TCTTGTCATCACCAAACGCTAGAGTCCTTCCACTGGGGATATACTCATCG
TCAGGCCCCTACAGGGTAGCGCCGCATCCCTGTATCATATCCTCCTTCCT
CTGTGTCCAACATCACTGATCCCCCACCCATCTTTAGCTCTTGGTTAGCA
ATCCATTGAATCTCCTACTTAAATGTCCCTTTTCCCAATTGAAACCTTCA
CGTGTTTTGTTGAATTATTATCGTCCTCTTCCCTTGTCCTTCCACTTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGCTAAAGGAGAGGCGGAG
GCTTCTGGGAGGGCTGTATGCACAAGGCCTATGTTGAGTGGGGACAGTGT
AAAGGAAGCAGGGACAGTAGAGGCCAGCCAGAGTTCCTGGGTACCACATA
TGGGTGCTATTGTCACCGCCAGTTCACAGACGAAATGGAGGCTCAGGCAT
GGTAAGGGACCTGCCTGCTCAGCTTACCCAAGGGAACTGGATAAGGGAAG
TGCAGTGCAGCCATTTGTGTGACAGTGCAAGGACTGAGTGGCCGTGTGGA
AACTGCCTAGGACACAGTGCTTCAGGACTGCTGTCACCTGCAGTGCTCTA
AGATTGTGAGATGGCTAACCACCAGGGGACCTTGAGTTCATGAAAGCAAT
CAGTGTAGAAATGTCATCTACTGATGGGTGTGGGTGTGGTGGGTACTCTG
GAATTTGAGGCAGGGGGATTCTGCGTTCATGGTCATTCCAGGCTTTCCTA
TTGAGACCATGTCTCAAAAACACAAAACATAGCTCCCTGTACGTGGCGAA
CACCCTCACCCTTTTGCCCTCCGGAATACCGAGGCCATACGATGTTCTGT
TTATTTTTGACGCCCTGCTTATGCCTGCTGGTACCTGTCGGATACACCTG
GTTTCAAAATTCCATACTAAAGTTTCGTTTATTGTATTCACTTGCTTCTT
TCGTTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_p08.b1 MSMg01no309_p08.b1 CHROMAT_FILE:
MSMg01no309_p08.b1 PHD_FILE: MSMg01no309_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:40 2005
         (312 letters)



>mm_chr7_132772245_132772956
          Length = 712

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatctctccaagccttagtttcctcttctataaaatgtggcaatggctttccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggaattccatctctccaagccttagtttcctcttctataaaatgtggcaatggctttccc 500

                                                                       
Query: 64  ttcagagttaggagtcaaatgcaccatcagaagaagcaaccccctcacaatgatgagtgg 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 ttcagagttaggagtcaaatgcaccattagaagaagcaaccccctcacaatgatgagtgg 440

                                                                       
Query: 124 ttgcaactggggatgtataactgagcacagacctcccagccatgctgagaatcttagggc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ttgcaactggggatgtataactgagcacagacctcccagccatgctgagaatctcagggc 380

                                                                       
Query: 184 ttgtgaagcagcagcaggaccagctttagtaccaggagtggggtgtcctaccagcatcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgtgaagcagcagcaggaccagctttagtaccaggagtggggtgtcctaccagcatcac 320

                                                                       
Query: 244 acttacccccagcctgggtctgaaagatgacggtttcactccactcactccaggtccccc 303
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 319 acttacccccagcctgggtctgaaagatgacggggtcactccactcactccaggtccccc 260

                    
Query: 304 tgaatgaag 312
           |||||||||
Sbjct: 259 tgaatgaag 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no309_p08.g1 MSMg01no309_p08.g1 CHROMAT_FILE:
MSMg01no309_p08.g1 PHD_FILE: MSMg01no309_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:40 2005
         (341 letters)



>mm_chr7_132597415_132598155
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttgctaaaggagaggcggaggcttctgggagggctgtatgcacaaggcctatgttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctgttgctaaaggagaggcggaggcttctgggagggctgtatgtacaaggcctatgttg 260

                                                                       
Query: 61  agtggggacagtgtaaaggaagcagggacagtagaggccagccagagttcctgggtacca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggagacagtgtaaaggaagcagggacagtagaggccagccagagttcctgggtacca 320

                                                                       
Query: 121 catatgggtgctattgtcaccgccagttcacagacgaaatggaggctcaggcatggtaag 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatgggtgctgttgtcaccgccagttcacagacgaaatggaggctcaggcatggtaag 380

                                                                       
Query: 181 ggacctgcctgctcagcttacccaagggaactggataagggaagtgcagtgcagccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacctgcctgctcagcttacccaagggaactggataagggaagtgcagtgcagccattt 440

                                                                       
Query: 241 gtgtgacagtgcaaggactgagtggccgtgtggaaactgcctaggacacagtgcttcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gtgtgacagtgcaaggactgagtggccgtgtggaaactgcctaggacacggtgcttcagg 500

                                                    
Query: 301 actgctgtcacctgcagtgctctaagattgtgagatggcta 341
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 actgctgtcacctgcagtgctctaaaattgtgagatggcta 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)