BAC Information

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BAC

Clone NameMSMg01-309P17
Chromosome7 (Build37)
Map Location 101,012,177 - 101,191,010
singlet/doubletdoublet
Overlap genenone
Upstream gene4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783, EG638305
Downstream geneEG545982, EG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309P17.T7 (MSMg01no309_p17.b1)MSMg01-309P17.TJ (MSMg01no309_p17.g1)
ACCAG433615AG433616
length762737
length of high quality
(start - end)		318 (46 - 363)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no309_p17.b1 PHD_FILE: MSMg01no309_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:42 2005CHROMAT_FILE: MSMg01no309_p17.g1 PHD_FILE: MSMg01no309_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,190,696 - 101,191,010)(101,012,177 - 101,012,462)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCTGAAGTGAATGGCTCACTCTTCAATAGATTCAACAATCAAT
CAAATAAAGGAGATTGGATCAGTCTAAGATAGAGAAAGTACTCACTCTGG
AAGCACCAAATTAAAAAAAAAAAGAAGAAAATCTCTGTTCAACATTTTAC
ACCTGGAATTGATTTTTTTCCCTTTAATTTCCTGTCATGACCACCAAGCC
TAATTGATGAGTGTCAAAGTTTCAACTTTCTGTGTTCTTTGCAGAGGCAA
CTCGGGGTCTTATCTAGAAACCTATTCTAACCACTCAATGCACAGAGATC
AGCACGTCGGGATTGAGTAGNTACCAGNAACTTGNCCCGGTAGAATTAAT
TTNTTAAAATAGAGATCCCCTGTCACAAAGAAAAAATAAAAGAAGAGGGG
CGGGGGCTAAGTGTATACATATCTTTCTTTTTTAAACAAACCTAATCAAA
ACCAATACTATTTATATCCCACATTACGAGAAATGACGCTCGCTCATCTC
TGTTTTATTTACAATAACGCCCATTACCATTTTTTATTCTTATATCTTAT
TCACCTTGCCTTCATCCCCCCTTATTCCTAATTACGTCTCTCCTTACCTT
TTGTATTTTCCATATTTTGATACAACCACATTACTCATATTTCACGATCC
GCCCATTCGTGTTATCCACACCTTGTAATATTTATTCTCGCTCCCTCTCC
TTTATTTTCTCT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTTTAGATGAGGAGACTTTTCTT
TGATATACTATGTAATTACCACTTTTATGGTCAATAATTCCCCTCTTTTC
TTCAAAGAAGGTAAGGGATATTTCAATCAGATATTAGCATAGTATAGCAC
ATTGATAGGCTTATGACTTAAATCTAATACTCACTATCTTTAGACAGTTG
TTTTGAATACCTAATATTCAGTTTTGTGTGCAGAAGGAACTTAATGATGA
CATAGGTTTTAAAATTTTTGAGCATTAAGAGAAATGATGTAAAGCTTTAA
AAACTGTGTAGTATGNCTTTTGCCNTTCCTATTCCTTTCCTATTCCTACA
CCTTTATTGTTTCTTTTACTTTCAAAGAAAATACAAATTCAAAATGGGTG
TCTGTTACTTGGTTTACCATAACTGTAACCCTTACATGTAAGATAGACAT
AACATTTGAAGTGTAAATTTCTGGATGTGTCCTATGATGCAGACTCACAT
GATGTTTTGCTGAGGCAAGACCTGAGAGAGGACACATGATCTTTGGAAAG
AGTATACTTAGGGCGTAACAGACAATGATAGGGTGTTTGTATAGCTAACT
GTGCAACAATACATTGGTCATGCATCTTCACTGTTCTTCACTTTGATAAG
AAAGCCCGTGCCGAGGTATTCATACTTTCCATCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_p17.b1 MSMg01no309_p17.b1 CHROMAT_FILE:
MSMg01no309_p17.b1 PHD_FILE: MSMg01no309_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:42 2005
         (318 letters)



>mm_chr7_101190493_101191210
          Length = 718

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggctgaagtgaatggctcactcttcaatagattcaacaatcaatcaaataaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcaggctgaagtgaatggctcactcttcaatagattcaacaatcaatcaaataaa 459

                                                                       
Query: 64  ggagattggatcagtctaagatagagaaagtactcactctggaagcaccaaattaaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggagattggatcagtctaagatagagaaagtactcactctggaagcaccaaattaaaaaa 399

                                                                       
Query: 124 aaaaagaagaaaatctctgttcaacattttacacctggaattgatttttttccctttaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaaaagaagaaaatctctgttcaacattttacacctggaattgatttttttccctttaat 339

                                                                       
Query: 184 ttcctgtcatgaccaccaagcctaattgatgagtgtcaaagtttcaactttctgtgttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttcctgtcatgaccaccaagcctaattgatgagtgtcaaagtttcaactttctgtgttct 279

                                                                       
Query: 244 ttgcagaggcaactcggggtcttatctagaaacctattctaaccactcaatgcacagaga 303
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 278 ttgcagaggcaactcggggtcttatctagaaaccaattcaaaccactcaatgcgcagaga 219

                          
Query: 304 tcagcacgtcgggat 318
           |||||||||||||||
Sbjct: 218 tcagcacgtcgggat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no309_p17.g1 MSMg01no309_p17.g1 CHROMAT_FILE:
MSMg01no309_p17.g1 PHD_FILE: MSMg01no309_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:42 2005
         (286 letters)



>mm_chr7_101011977_101012662
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttagatgaggagacttttctttgatatactatgtaattaccacttttatggtcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttagatgaggagacttttctttgatatactatgtaattaccacttttatggtcaat 260

                                                                       
Query: 61  aattcccctcttttcttcaaagaaggtaagggatatttcaatcagatattagcatagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcccctcttttcttcaaagaaggtaagggatatttcaatcagatattagcatagtat 320

                                                                       
Query: 121 agcacattgataggcttatgacttaaatctaatactcactatctttagacagttgttttg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacatcgataggcttatgacttaaatctaatactcactatctttagacagttgttttg 380

                                                                       
Query: 181 aatacctaatattcagttttgtgtgcagaaggaacttaatgatgacataggttttaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacctaatattcagttttgtgtgcagaaggaacttaatgatgacataggttttaaaat 440

                                                         
Query: 241 ttttgagcattaagagaaatgatgtaaagctttaaaaactgtgtag 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgagcattaagagaaatgatgtaaagctttaaaaactgtgtag 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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