BAC Information

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BAC

Clone NameMSMg01-313A08
Chromosome7 (Build37)
Map Location 112,853,446 - 112,853,782
singlet/doubletsinglet
Overlap geneDnhd1
Upstream geneOlfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, LOC100042811
Downstream geneLOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A08.T7 (MSMg01no313_a08.b1)MSMg01-313A08.TJ (MSMg01no313_a08.g1)
ACCAG435074AG435075
length1,2771,275
length of high quality
(start - end)
740 (91 - 830)337 (508 - 844)
definitionCHROMAT_FILE: MSMg01no313_a08.b1 PHD_FILE: MSMg01no313_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:14 2005CHROMAT_FILE: MSMg01no313_a08.g1 PHD_FILE: MSMg01no313_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCACTTNNNNNNNNCCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAAGTGAGGAATACCCTATTAATGACAAGCACCTGAA
AAAATGTTCAACATCCTTACTCATCAGGGAAACGCACATCAAAACAACCT
TGAGATTCCACCTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTCCCTACCGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
ACAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAAT
CACAAAGGAACTCTCACAATATGCACTCACTGATAAGTGGATATTAGCCC
AGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATTAA
ACTCAAGAGAACGAAGACCAAAGTGTGGACACTTTGCCTCTTCTTAGAAT
AGGAAACAAAACACCCATGAAAGGAGTTACAGAGACAAAATTTGNAAGTG
TGACGAAAGGATGGACCATCTAGTGATTGCCATATCCAGAGATCCATCCC
ATGATCAGCTTCTCAACGCTGACACCATTGCATACACTAGAAAGATTTTG
CTGAAAGGACCCAGATATAGCTGTCTCCTGTAAGACTATGCCGGGGTCTA
GCAAACACAGAAGTGGATGCTCCCAGTCAGCTATTGGAAGGATCACAGGC
CCCCCCAATGAAGGAATTAAAAAAAGGCCCCCAAGGAAATAAAGGGAAAC
GGCACCCCTATGGTGGAACACCAATATGAATTAACCTGTCCCCGGAAGCT
CTTGTCTCTAACGGGGAAGGTTCCAAAAAGGGCTCAAAGGGCCCCCCTTT
AAAAAGAGCCCCTTGGCATTGCAACTTTATTTGCCCCCCAAAGGTAAATG
CCTTGCCCAAACAGGGAAAGGGTTGTTTTAAATAATTCCTCTCTTTTCAA
CCATTACTCTACTACATCTACTATCTC
CCGCTGTTNNNNNNACAGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGGCCCCCTTTTCATCCTC
TTGTCTTGATACGACTCTTTAAATCTCACAGCCCCCTTCCTCTTACTTTG
TAGGAGCCTTTTAGCTGTGCTTCCAAGTCAGTGAGCAGTTTGGTTTGGGT
ACTGTGCCTCTCAACCATCAGCCTCAGAGTCTTCAAGGCAGTCTGAATGC
TAGAAACACAATAGACCTCTTGAGTGGACTCAGAAGAGAAGAAGGAAGTG
AACTGCAAGGGTAGGGCCACTTACCGACTGGCCCTCATCCTCATCTGCAG
GACCATCTGCTGCTGTTGCTGCAGGAACATATCCAAGAAGTCCTGGAAGG
TCTTGTTTTTGACAAGTGGCAATGCAGGGCACATGTGTTTATGGTAACAG
GCAGATGATTTTTGTATGCCACCCATGATGTTGGCCACATTACGAATAAA
AAGGTTGAAATCTGGGTACTTCAAGGAACCTGAAATGGAAATAGTTTTGG
TGTGGCCTTGTAGGATTGGATGGCAATGAGAAAGGAAAAGATCTGCTCTC
AGTTCAGGAAGGAAAGTAGAAAATGTCAGTCAGAAGCAAGGAGAAAAGAA
GAGTGAGATATCAGGTCAAGAAGATGAGACCACCCTGGGAAGGAACTCTC
ACTCGTCAGTCGGGATGAGTAGTCAGAACAAATGAAAAGTGGCTCACCAT
CATCAAGAGGTAGACTGTGATCATTCTCCAGGCAGAATTGAGCAATCCTG
ACCAGAGAAGCTTGGTCCCAGGGTTCATAGCGTTCAACACTGGCAATGGT
CAATTGAAGGAGATTCAGCGAAAGGGTAGGGGCCAGCTGATTTTGGGCTT
GGTTATCTCCCACCATGAAGAACATGTGGAGGTTGTTACCACTTGGTGGT
AAAAACCGGAAACTAGAGAGGACACGGCTGTCTTCATCCTCTCGAACAGT
TTACATATCTTAAAACTTGTTTCCAATCTGAACCTTTTAACCCCCGGCCC
CCCTAAAACCTTTTTCTCCTGCCTTTTTTGGCCCACAAAAAAGTAAAAAC
GAATTTGGTTTGTAGGGGTTTGGGGCCCCACCAAATCAAAATGGGGCGCC
CTCTAAGGGTGGGGATTATCCTAGGCGCTCCTCTTGGGAAAGGACCTCTC
TTTAATCAAAAATCCTTATTTGTGTGGGTCCATCACCTATATACATTTTC
ACCTCCGCCCATTCTCACACAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a08.g1 MSMg01no313_a08.g1 CHROMAT_FILE:
MSMg01no313_a08.g1 PHD_FILE: MSMg01no313_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:15 2005
         (337 letters)



>mm_chr7_112853246_112853982
          Length = 737

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctgggtacttcaaggaacctgaaatggaaatagttttggtgtggccttgtaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaatctgggtacttcaaggaacctgaaatggaaatagttttggtgtggccttgtaggatt 478

                                                                       
Query: 61  ggatggcaatgagaaaggaaaagatctgctctcagttcaggaaggaaagtagaaaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggatggcaatgagaaaggaaaagatctgctctcagttcaggaaggaaagtagaaaatgtc 418

                                                                       
Query: 121 agtcagaagcaaggagaaaagaagagtgagatatcaggtcaagaagatgagaccaccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agtcagaagcaaggagaaaagaagagtgagatatcaggtcaagaagatgagaccaccctg 358

                                                                       
Query: 181 ggaaggaactctcactcgtcagtcgggatgagtagtcagaacaaatgaaaagtggctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggaaggaactctcactcgtcagtcgggatgagtagtcagaacaaatgaaaagtggctcac 298

                                                                       
Query: 241 catcatcaagaggtagactgtgatcattctccaggcagaattgagcaatcctgaccagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 catcatcaagaggtagactgtgatcattctccaggcagaattgagcaatcctgaccagag 238

                                                
Query: 301 aagcttggtcccagggttcatagcgttcaacactggc 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagcttggtcccagggttcatagcgttcaacactggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)