Query= MSMg01no313_m08.b1 MSMg01no313_m08.b1 CHROMAT_FILE:
MSMg01no313_m08.b1 PHD_FILE: MSMg01no313_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:51 2005
(671 letters)
>mm_chr7_108696645_108697714
Length = 1070
Score = 1205 bits (623), Expect = 0.0
Identities = 658/671 (98%), Gaps = 3/671 (0%)
Strand = Plus / Minus
Query: 1 tgtttctataagtagccccaataaactctctggttcactaagcctta--aaaagaaaaaa 58
||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 675 tgtttctataagtagccccaataaactctctggttcactaagcctaaagaaaaaaaaaaa 616
Query: 59 aaaggggaggtggttcagtttgtggcagtagatgtctatagcacaaagtttatctggggc 118
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 615 aaaagggaggtggttcagtttgtggcagtagatgtctatagcacaaaatttatctggggc 556
Query: 119 acagatcgggaagcagagagcttgtgcctgaagcaaggccaagctataactcttggtaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acagatcgggaagcagagagcttgtgcctgaagcaaggccaagctataactcttggtaag 496
Query: 179 ccatgcaaaccttgggttccaaaagttccctacatcttcctcaaataatgctgccacctg 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 ccatgcaaaccttgggttccaaaagttccctacatcttccccaaataatgctgccacctg 436
Query: 239 ggacctaagtattcaagctttcaccctcaaactatagcaaatatgaacagttaaagtgaa 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggacctaaatattcaagctttcaccctcaaactatagcaaatatgaacagttaaagtgaa 376
Query: 299 ctggttactaaccgtatatcgggcactcactgtgacaaagaccttacagattttattctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 375 ctggttactaaccgtatatcgggcactcactgtgacaaagaccttacagatttcattctc 316
Query: 359 aagatagggctaccaatatagtgcagcatctgccagttaactaactaactctcatcagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagatagggctaccaatatagtgcagcatctgccagttaactaactaactctcatcagtt 256
Query: 419 acatctgaaggactcacatggtggagggagaacactgcctccaggttgccctctgacctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acatctgaaggactcacatggtggagggagaacactgcctccaggttgccctctgacctc 196
Query: 479 cacacacatgtcactgtgcctgtacctgcacacacacacccacaaacaagtacatgaata 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 195 cacacacatgtcactgtgcctgtacctgcacacacacacccataaacaagtacatgaata 136
Query: 539 aaaagtcaatgaaatttttttcataacttctgtcttagttagagttttattgctgtgagg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aaaagtcaatgaaatttttttcataacttctgtcttagttagagttttattgctgtgagg 76
Query: 599 agacnacatgaccatggcnactcttttatttattattattattattattattattattat 658
|||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 75 agacaacatgaccatggcaactctttt-tttattattattattattattattattattat 17
Query: 659 tattattatta 669
|||||||||||
Sbjct: 16 tattattatta 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_m08.g1 MSMg01no313_m08.g1 CHROMAT_FILE:
MSMg01no313_m08.g1 PHD_FILE: MSMg01no313_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:51 2005
(370 letters)
>mm_chr7_108542679_108543448
Length = 770
Score = 601 bits (311), Expect = e-176
Identities = 362/399 (90%), Gaps = 33/399 (8%)
Strand = Plus / Plus
Query: 1 aaatgtgggaggaattagctacaacccctcagctcctccctctgcccctgctaccaggca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 176 aaatgtgggaggaattagctacaacccctcagctcctccctctgcccctgctacaaggca 235
Query: 61 gagggagcctgagatcctccaggggctccttgtgccctgaccagcagctgcccctcagga 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 236 gagggagcctgagatcctccaggggctccttgtgccctgaccagcagctgtgcctcagga 295
Query: 121 cccacagggtgagggcctgtggctaggaccccagcctc---------------------- 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cccacagggtgagggcctgtggctaggaccccagcctcagctgggtagcctctgcccagc 355
Query: 159 ---cctggcttgccctcccctcttctttttctgactctcatgcctttcttttcttctctt 215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctccctggcttgccctcccctcttctttttctgactctcatgcctttcttttcttctctt 415
Query: 216 ctggcttctttaagccctgctctctttcagtctgaggatggtccatgcaggtttgagtga 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctggcttctttaagccctgctctctttcagtctgaggatggtccatgcaggtttgagtga 475
Query: 276 ctccttccccttccctcctccacctcctcctcccatccctacccctccacttttttc--- 332
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 476 ctccttccccttccctcctccacctcctcctcccatccctacccctccacct----ccca 531
Query: 333 -tctttcttggattgatctcccccaccccctcctctagg 370
||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctctttcttggattgatctcccccaccccctcctctagg 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
