BAC Information

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BAC

Clone NameMSMg01-315E17
Chromosome7 (Build37)
Map Location 38,073,652 - 38,155,297
singlet/doubletdoublet
Overlap genenone
Upstream geneTshz3, LOC100043874
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315E17.T7 (MSMg01no315_e17.b1)MSMg01-315E17.TJ (MSMg01no315_e17.g1)
ACCAG435979AG435980
length726725
length of high quality
(start - end)		370 (46 - 415)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no315_e17.b1 PHD_FILE: MSMg01no315_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:43 2005CHROMAT_FILE: MSMg01no315_e17.g1 PHD_FILE: MSMg01no315_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,154,933 - 38,155,297)(38,073,652 - 38,074,300)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCTCATCAGGGTTATTTTTTTTCCCCTCAGAAATATGCTGCA
ATGACAGAGACTAACACAAACAAGGGACTGACAGCCAAAGGAGGTTTCCC
TAAGCCCACACACACAGGTGTGCAGAGGCTGTGCCTCTGAGGCTACCTGC
TATGGGCTTCTACAAAGTCCTCTGCTGGGGCAACTTTCACTCAACCCCAC
TCCAGGGCTCTCTCTAGTGCTTTAATTCTGCCTTCAGGCACTTTGGTCTC
TCTGTGTGAGCTCTTCCTCCCGCTTGCTCTCTAGCTCCCATAAGCAGGCC
ACTAGAGAAGGTGAACTTCCCAGCTAATTAAAGGCCTGACAACCTTCCCT
CCCTGAGGCCTTGCCCCCCACCAGCAGGCTTGGCGGGGAGGCTCCCTGCT
GCCTCCTGGTGGCTGGTGAGAGCCTATCAAGAGTGTCTACGCCACTGAGA
CCACAAGGGTCGTGCCCTTTACCTGGGAGTGTGTACAGTTTGGACTGTCC
TCAAATATGGAATGTTCATTGTGTTAGAAAAAAAAAGTATGGCCACCTTT
TCCCACAGCCTCTGTCCACTTTCATTTGTACCTTATCAGTTGCTTCTGGA
AACCAATGGACTGAACTGGGTTCAACGTAGGGGAGGAAAAGCCAGCTTTA
GCACGGTGGTTGCTCAGGGGGGAATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTCAGGAATGAGCTAAAATA
CGTCTGAATTCACTTTTGTTTTTTAAAAGTTCTTCACTGGCAATACCTTG
CCTGCAAAGAATGAGCTCCAAAATATTAACTTATCAGACCAGGGAGTCCA
TTTCATAGAAGAGGAAGTTGGGGAGTGAGGATCATGGAGTGTTCCTGTGT
TGTTATACTCCATCACCCGTAGGCTTCCAACTGAGTGGAAAGAAGAAACG
CCTGAGAGAGACACACGGAAGTGCCATCTTAAAAACATTCTGTGAAGAGC
CACCCTGTGGCATCAAAGCCTGTGACACAAGCTTGTGACTTCAGCCTGGT
TCTAGAAAACTAAGAGCCGCAACCAGAAGGTCTACTCCCTGCTTGCAGGG
ACCATTTAGGGAGGCAGGTGCTTCCTGCACAGCACAGCTCTGGGATCTTT
AGCTGCAAAGGTCTTAGCTTCCAAAGATACTCGCTTAGCTCGAATCTACC
AGTGGGAGCCAGCGGGAGAGTTGCTCAGTGGTCTAGAATTTGGCTACTAT
TTACAACACCCTGGCTTAATTCCCAGTACTGAACAAAAAGAGAAAGATAG
TTCTGTTGCTAAGTGGATCATTTTATCTCAAGCTGGAAGAAGGGTTCATG
ACCATCTCTCATGGTGAAAGGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_e17.b1 MSMg01no315_e17.b1 CHROMAT_FILE:
MSMg01no315_e17.b1 PHD_FILE: MSMg01no315_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:43 2005
         (370 letters)



>mm_chr7_38154729_38155498
          Length = 770

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctcatcagggttattttttttcccctcagaaatatgctgcaatgacagag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctttcctcattagggttattttttttcccctcagaaatatgctgcaatgacagag 510

                                                                       
Query: 65  actaacacaaacaagggactgacagccaaaggaggtttccctaagcccacacacacaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actaacacaaacaagggactgacagccaaaggaggtttccctaagcccacacacacaggt 450

                                                                       
Query: 125 gtgcagaggctgtgcctctgaggctacctgctatgggcttctacaaagtcctctgctggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtgcagaggctgtgcctctgaggctacctgctatgggcttctacaaagtcctctgctggg 390

                                                                       
Query: 185 gcaactttcactcaaccccactccagggctctctctagtgctttaattctgccttcaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcaactttcactcaaccccactccagggctctctctagtgctttaattctgccttcaggc 330

                                                                       
Query: 245 actttggtctctctgtgtgagctcttcctcccgcttgctctctagctcccataagcaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actttggtctctctgtgtgagctcttcctcccgcttgctctctagctcccataagcaggc 270

                                                                       
Query: 305 cactagagaaggtgaacttcccagctaattaaaggcctgacaaccttccctccctgaggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cactagagaaggtgaacttcccagctaattaaaggcctgacaaccttccctccctgaggc 210

                
Query: 365 cttgc 369
           |||||
Sbjct: 209 cttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_e17.g1 MSMg01no315_e17.g1 CHROMAT_FILE:
MSMg01no315_e17.g1 PHD_FILE: MSMg01no315_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:43 2005
         (649 letters)



>mm_chr7_38073452_38074500
          Length = 1049

 Score = 1232 bits (637), Expect = 0.0
 Identities = 646/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtcaggaatgagctaaaatacgtctgaattcacttttgttttttaaaagttcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtcaggaatgagctaaaatacgtctgaattcacttttgttttttaaaagttcttca 260

                                                                       
Query: 61  ctggcaataccttgcctgcaaagaatgagctccaaaatattaacttatcagaccagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcaataccttgcctgcaaagaatgagctccaaaatattaacttatcagaccagggag 320

                                                                       
Query: 121 tccatttcatagaagaggaagttggggagtgaggatcatggagtgttcctgtgttgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatttcatagaagaggaagttggggagtgaggatcatggagtgttcctgtgttgttat 380

                                                                       
Query: 181 actccatcacccgtaggcttccaactgagtggaaagaagaaacgcctgagagagacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actccatcacccgtaggcttccaactgagtggaaagaagaaacgcctgagagagacacac 440

                                                                       
Query: 241 ggaagtgccatcttaaaaacattctgtgaagagccaccctgtggcatcaaagcctgtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtgccatcttaaaaacattctgtgaagagccaccctgtggcatcaaagcctgtgac 500

                                                                       
Query: 301 acaagcttgtgacttcagcctggttctagaaaactaagagccgcaaccagaaggtctact 360
           ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||
Sbjct: 501 acaagcttgtgacttcagcctggttctagaaaactaagaggtggaaccagaaggtctact 560

                                                                       
Query: 361 ccctgcttgcagggaccatttagggaggcaggtgcttcctgcacagcacagctctgggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgcttgcagggaccatttagggaggcaggtgcttcctgcacagcacagctctgggat 620

                                                                       
Query: 421 ctttagctgcaaaggtcttagcttccaaagatactcgcttagctcgaatctaccagtggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagctgcaaaggtcttagcttccaaagatactcgcttagctcgaatctaccagtggg 680

                                                                       
Query: 481 agccagcgggagagttgctcagtggtctagaatttggctactatttacaacaccctggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccagcgggagagttgctcagtggtctagaatttggctactatttacaacaccctggct 740

                                                                       
Query: 541 taattcccagtactgaacaaaaagagaaagatagttctgttgctaagtggatcattttat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taattcccagtactgaacaaaaagagaaagatagttctgttgctaagtggatcattttat 800

                                                            
Query: 601 ctcaagctggaagaagggttcatgaccatctctcatggtgaaaggtgat 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcaagctggaagaagggttcatgaccatctctcatggtgaaaggtgat 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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