BAC Information

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BAC

Clone NameMSMg01-317E02
Chromosome7 (Build37)
Map Location 107,807,620 - 107,808,133
singlet/doubletsinglet
Overlap genePlekhb1
Upstream geneSlco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167
Downstream geneB930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317E02.T7 (MSMg01no317_e02.b1)MSMg01-317E02.TJ (MSMg01no317_e02.g1)
ACCAG437378AG437379
length710710
length of high quality
(start - end)
535 (72 - 606)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no317_e02.b1 PHD_FILE: MSMg01no317_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:14 2005CHROMAT_FILE: MSMg01no317_e02.g1 PHD_FILE: MSMg01no317_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGATTGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAA
CAAAACAAAACAAAACAAAATAAACCCATTGAGACGGGTTCTAAGTTGCC
CGGATTGTCCTTGAGTTCATTCTGTAGCTCAGGCTAGCCCTCAACCTCTT
GCATCTGAGCCTACCAGGTACCTGGAGACTGCACATCTGTACACCCAGGC
CCAGCTTCGGCTGAACTTAGCTCCTTGTCCTTGGGTATCCCGGAGCAGAG
GCAGTTTGTCCAGCAATTGTCTATACGTGGCTATTGCCCTTTGGGGCATG
GCCTTTCCTTCATCCTCTCTCTCTCCCCGACTTGAGACCCCAAGCCATAC
ATTTTTTGTTTTTATTTTTCCCTCTAAAAGTTTTTGTTTTCTGAGATGCT
CATTAAGTACTCTGGGAAGTCTCTCTTAGACTGCAGACCTTTGATGATCC
TCCTGCCTCCAGTGCTTGCCTTTGTCTCTTGAAGATTACAAGCCAGGCTT
CAAGCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCGCAGAAGATGATGTTTGTGTGTGCGCAC
AGCCCACCCTTCCTTGCAAACCATCCGCCATGTTATCTAGACACAGGTGG
ATTTACGATT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTATCAAACAAAAACAAAGA
TGGATCCTGAGGGCTGGAAAGATGGCTTGGCAGTCAAGAACACTAGCAAC
TCTGGCAAAGGTCCTAGGTTCCAGACCCAGGGCCCACACTATAGCTCACA
ACCATCTGTTTAACTCGAGTTCCAGGAGTTCTGGCCTCCGAGGGCACTGC
AAGCATGTGTATGGCACAGTAACATGCAGGCAAAACAACTTTATTCCACA
AAAAGGACCTAGAGAAATGAAGTGACTTGCCCAGGAATCTGACCGAAGGC
CCACATTTGACTGTTAAAATGAGATGCTTCCTGGCTGGAGCCCCAGCCCC
AGAGTCTTTATCTCCAGGTGTTTTTTGGGTTTGGTTGTTTTTGAGACAGA
GGCTCTCTGTGTAGCCCTGGCTATCCTGGAGCTTGCTCTGTAGACCAGGC
TTGTCTCAGAGATCTACCTGCATCTGCCTCCCAAGTGCTGGGATTAAAGG
TGTGCACTGCACCACCAAGTTTAGGCCTCTTATCTCAGGGTTTTTTCTGT
TGCTGCCTTCATGATGGTTCAAGATGGCTTCAGGCAGTAGGATAACTTGA
TCCCAAGGGTTTGGGGACAGCAGGGACAAGACTGTATGTGTTCAAAAATA
AAACACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_e02.b1 MSMg01no317_e02.b1 CHROMAT_FILE:
MSMg01no317_e02.b1 PHD_FILE: MSMg01no317_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:14 2005
         (535 letters)



>mm_chr7_107807394_107808330
          Length = 937

 Score =  862 bits (446), Expect = 0.0
 Identities = 499/518 (96%), Gaps = 6/518 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctatacagagaaaccctgtctggaaaaacaaaacaaaacaaaacaaaataaacccattg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||| |||   ||||
Sbjct: 740 gctatacagagaaaccctgtctggaaaaacaaaagaaaacaaaacaaaa-aaa---attg 685

                                                                       
Query: 61  agacgggttctaagttgcccggattgtccttgagttcattctgtagctcaggctagccct 120
           ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agatgggttctaagttggccagattgtccttgagttcattctgtagctcaggctagccct 625

                                                                       
Query: 121 caacctcttgcatctgagcctaccaggtacctggagactgcacatctgtacacccaggcc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caacctcttgcgtctgagcctaccaggtacctggagactgcacatctgtacacccaggcc 565

                                                                       
Query: 181 cagcttcggctgaacttagctccttgtccttgggtatcccggagcagaggcagtttgtcc 240
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 564 cagcttcggctgaacttagctccttgtccttgggtatcccggggcaggggcagtttgtcc 505

                                                                       
Query: 241 agcaattgtctatacgtggctattgccctttggggcatggcctttccttcat-c-ctctc 298
           |||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||
Sbjct: 504 agcaattgtctatacgtgtctattgccctttggggcatgacctttccttcattctctctc 445

                                                                       
Query: 299 tctctccccgacttgagaccccaagccatacattttttgtttttatttttccctctaaaa 358
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctctccccggcttgagaccccaagccatacattttttgtttttatttttccctctaaaa 385

                                                                       
Query: 359 gtttttgttttctgagatgctcattaagtactctgggaagtctctcttagactgcagacc 418
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 384 gtttttgttttctgagatgctcattatgtactctgggaagtctctcttagactgctgacc 325

                                                                       
Query: 419 tttgatgatcctcctgcctccagtgcttgcctttgtctcttgaagattacaagccaggct 478
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgatgatcctcctgcctctagtgcttgcctttgtctcttgaagattacaagccaggct 265

                                                 
Query: 479 tcaagctcctctctctctctctctctctctctctctct 516
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaagctcctctctctctctctctctctctctctctct 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 937
Length adjustment: 10
Effective length of query: 525
Effective length of database: 927
Effective search space:   486675
Effective search space used:   486675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)