BAC Information

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BAC

Clone NameMSMg01-317I06
Chromosome7 (Build37)
Map Location 102,962,091 - 102,962,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317I06.T7 (MSMg01no317_i06.b1)MSMg01-317I06.TJ (MSMg01no317_i06.g1)
ACCAG437559AG437560
length726723
length of high quality
(start - end)
584 (46 - 629)504 (78 - 581)
definitionCHROMAT_FILE: MSMg01no317_i06.b1 PHD_FILE: MSMg01no317_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:32 2005CHROMAT_FILE: MSMg01no317_i06.g1 PHD_FILE: MSMg01no317_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGG
AATTCTCACCTTACGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCATTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTACCCCCAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCATTACTTGGCAATTACA
TGGGAACTGATTTCTTGGGAGCCAAGTCTCTACTCCAGACCACCTCCCCA
ACCCCCCTTCCCCCAACACTTATTAGCTGGATAATTTAAAACAGCCTCTT
AGTCTTTGGGATCATCAGTTTCCCCTTCTGTAATGTGGGTACTCACCTCA
CAGGACTGAGGACCAGTGAAGAGTGAACAGGAGTAAAGTGCTAAGCAGTG
TGCCTGCACACACTAAACGGGGAATCGGGGCAGGGAGCCTCTTACAACCT
GGGACTTTGAATGGAGCCTCCTCCTGTAACTTGTAACTCTGTGTGGAGAG
ACACAGTTCGAGAGCTCCCCCCTACAAGGGCTGAGACATGTTTCAGTGAT
ACACGATGTCTCTGGCATATACAAGGTTTTAAGTCTAATCCCTATCACAC
CCACAAAAGGACCTTAGACTTTGAAGTCCACTCTGTTGGAAGGTTTTATC
CTAAGTCTTCTTACAGCTTAGCGTATATGTATTGGTATTTGTAAGAGAAA
GATGCATTTAATTTTCTTGAACACGGGGATATACATGTAATTTATATATT
CCCACTATTTTACTATTGTCTCTTTCTCTGATGCTGCATTTACAGTCCTG
GTCCTTTAATTATGCTTCCAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_i06.g1 MSMg01no317_i06.g1 CHROMAT_FILE:
MSMg01no317_i06.g1 PHD_FILE: MSMg01no317_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:32 2005
         (504 letters)



>mm_chr7_102961891_102962794
          Length = 904

 Score =  915 bits (473), Expect = 0.0
 Identities = 496/509 (97%), Gaps = 10/509 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcattacttggcaattacatgggaactgatttcttgggagccaagtctctactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattcattacttggcaattacatgggaactgatttcttgggagccaagtctctactcca 260

                                                                       
Query: 61  gaccacctccccaaccccccttcccccaacacttattagctggataatttaaaacagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccacctccccaaccccccttcccccaacacttattagctggataatttaaaacagcct 320

                                                                       
Query: 121 cttagtctttgggatcatcagtttccccttctgtaatgtgggtactcacctcacaggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagtctttgggatcatcagtttccccttctgtaatgtgggtactcacctcacaggact 380

                                                                       
Query: 181 gaggaccagtgaagagtgaacaggagtaaagtgctaagcagtgtgcctgcacacactaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaccagtgaagagtgaacaggagtaaagtgctaagcagtgtgcctgcacacactaaa 440

                                                                       
Query: 241 cggggaatcggggcagggagcctcttacaacctgggactttgaatggagcctcctcctgt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggggaagcggggcagggagcctcttacaacctgggactttgaatggagcctcctcctgt 500

                                                                       
Query: 301 aacttgtaactctgtgtggagagacacagttcgagagct-----cccccctacaagggct 355
           |||||||||||||||||||||||||||||||||||||||     |     ||||||||||
Sbjct: 501 aacttgtaactctgtgtggagagacacagttcgagagctttgttc-----tacaagggct 555

                                                                       
Query: 356 gagacatgtttcagtgatacacgatgtctctggcatatacaaggttttaagtctaatccc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gagacatgtttcagtgatacacgatgtctctggcatatacaaggttttaagtctaatccc 615

                                                                       
Query: 416 tatcacacccacaaaaggaccttagactttgaagtccactctgttggaaggttttatcct 475
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 616 tatcacacccacaaaaggaccttaaactttgaagtccactctgttggaaggttttatcct 675

                                        
Query: 476 aagtcttcttacagcttagcgtatatgta 504
           ||||||||||||||||||| |||||||||
Sbjct: 676 aagtcttcttacagcttagtgtatatgta 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)