BAC Information

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BAC

Clone NameMSMg01-318E07
Chromosome7 (Build37)
Map Location 66,113,873 - 66,114,215
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668807, LOC434189, Atp10a, LOC621446
Downstream geneLOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E07.T7 (MSMg01no318_e07.b1)MSMg01-318E07.TJ (MSMg01no318_e07.g1)
ACCAG438115AG438116
length720730
length of high quality
(start - end)		374 (44 - 417)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no318_e07.b1 PHD_FILE: MSMg01no318_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005CHROMAT_FILE: MSMg01no318_e07.g1 PHD_FILE: MSMg01no318_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAAATTGTACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC
ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC
CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATATAACTCAAG
AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA
GCTAAACAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAACACC
TGAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAGCAA
CCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGCCCCCCCACGCGCAGAAAGAGAAACACTCTTCA
ATTGTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATGGTACTACCGGAAGATCCCGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAAAAGGACACAT
GCTCCACTATGTTCATAGCAGTCTTATTTATAAAAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCTACAGAGGTATGGATACACATAATGGGGCTCAT
TTACACCATGGAGTACTATT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTACATAAACCAGATCAGCCTCAATC
TCACACAGATCTATTTGCCTCTGCTTCCTGAGTGGATTAAAAACATGCAC
CCCCAACCTCAGCCAAGATAAAAGAAATCTTAAAGTCAGACAGAACAGCT
CACATCTGTAATCCTAGAACCTGGTAACCAGAGGCGGATGAACTTGACTG
GGTCCGAAACTACCCTAGACTACAGAGGAAGGCCTTATCTATTAACAAAG
TGGGGTGGTGAAGGAAGGGGAAGGACTCCAACACATGCTACAGCGCAGTT
CACACGCAGATATGAGGCTGAATGAAATAAAGATGGAGAGGTCACATCCA
ACTACAGCCACTTCATGCCCCCCCCCCCCTTAGCCTTAAGGAGAAATGCT
CACTCAACTTTTTTGAGGGGGAGGGGTGATAAGGTCCAGAGATAAGCACA
GCGAGGCCCACTTAGGCGAATGTATTAGTTACTTTATGTTCTTATCTTTA
CGATCTATTCACTACCGGCAAAAAGTAACTCGTACCAACGTCTTTACAAT
TTAATTACCATTGCCTGTTTGGCGCCAATGAAATTTCGCCATTAATTTGA
TTATCTCTTCTACCCCCGTTGTTTCTTAAGCCACTCCCTCCCCTATTTAT
CGCAATCCTCTTGTCTCTCCTCCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e07.g1 MSMg01no318_e07.g1 CHROMAT_FILE:
MSMg01no318_e07.g1 PHD_FILE: MSMg01no318_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:25 2005
         (343 letters)



>mm_chr7_66113673_66114415
          Length = 743

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacataaaccagatcagcctcaatctcacacagatctatttgcctctgcttcctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacataaaccagatcagcctcaatctcacacagatctatttgcctctgcttcctgagt 260

                                                                       
Query: 61  ggattaaaaacatgcacccccaacctcagccaagataaaagaaatcttaaagtcagacag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ggattaaaaacatgcacccccaacctcagccaagttaaaagaaatcttaaagtcagacag 320

                                                                       
Query: 121 aacagctcacatctgtaatcctagaacctggtaaccagaggcggatgaacttgactgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagctcacatctgtaatcctagaacctggtaaccagaggcggatgaacttgactgggt 380

                                                                       
Query: 181 ccgaaactaccctagactacagaggaaggccttatctattaacaaagtggggtggtgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgaaactaccctagactacagaggaaggccttatctattaacaaagtggggtggtgaag 440

                                                                       
Query: 241 gaaggggaaggactccaacacatgctacagcgcagttcacacgcagatatgaggctgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggggaaggactccaacacatgctacagcgcagttcacacgcagatatgaggctgaat 500

                                                      
Query: 301 gaaataaagatggagaggtcacatccaactacagccacttcat 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaataaagatggagaggtcacatccaactacagccacttcat 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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