BAC Information

Click to search

BAC

Clone NameMSMg01-318G16
Chromosome7 (Build37)
Map Location 48,320,135 - 48,320,506
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164
Downstream geneLOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318G16.T7 (MSMg01no318_g16.b1)MSMg01-318G16.TJ (MSMg01no318_g16.g1)
ACCAG438226AG438227
length744745
length of high quality
(start - end)
373 (38 - 410)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no318_g16.b1 PHD_FILE: MSMg01no318_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:35 2005CHROMAT_FILE: MSMg01no318_g16.g1 PHD_FILE: MSMg01no318_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGAACCGCGGAATTCCATAC
ATTTCCTCCCATGCTAAACACATTCCTACCTGTGAAAATACACTGAGATA
GGGAAAGAGTTTGTCTTTTACTCACAAATATGCTAAAATACCCACATTGC
TTTTTTCGTATAAGACAGCATCCTGTACCAGCTAATACATTCTTTGTTTT
TCCAGCTGTTCCACTCACTTTCTCCTTAGATGGGTCTCAGAAACAAGCAT
GGCACAGAATGCTCAAAGCCCAAAATACTACAGAACCTGTTGCAAGGAGG
AGGAAGTTACAATAACTGCCACACTCCTTTCACACGGGGACAAAGACAGA
AGGCAGCCAGACTAGGTAGTGTACAATCATGATACTAAAAACAAGGAGCT
GGAGACAAAAAGAACCACCGCGAGTTTGAAGCCTGAGAAGCATTCACAGT
AAATTCCAGAACAACTTGAGCTACAGAGGCAAACATATCTCAGGTAAATG
AAAGAGGAGAGTAAAATTACAGAGGTAATAGAATATTGACAGGAGAACAG
CAACAAATGCTGAAAGAGGGGATGCATGCAGACCTTCTGTTGTTTACTTA
TAAGGGCAAAACACACTTTACACACATGTGCTTAATGAAATGAAGACTAC
TATTTCTGAATGTTCACAGTGATATCACTCACTAGTGCAAGGATGCAGGG
TCATGTTGGTTCAAGGATCAAAGACTAGATAGAGTGGATAAAAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCTCTCAATATCTTTGTTTAGCTCTGTACCCTATTTACTAATGGTGT
TGTTTCATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTGTATACATTGGAT
ATTACTTTCCCTGGGTTTTATTAAGGACTTATTTGAGTACCTCTTGTCAT
CTTTATATATTTGGTTTTAAGGTTGCCTGTGTGTTTTAGGTATGTTAGAA
TATTCTGTGCCTGCTGTGGTATTATCGTTCAGCTCTAGTGGACATATCAC
CCTGGCTCTTATTGACCCTTAGTTTACTCTGATTGGTAGGTATCTGTGTC
TGGCATGATTATATGTTCTTGCCACTCCCCCCCTGGGTTTTCCTTTGTTG
GGTATGTGCTTTTCCCCCCCCCCTCTATCTTCTATCTGAAGTTTTGGAGC
GTGTGTTGACTGTTTTTCAGGCCTGCTCAGCCTGTGTGTGCATAGGTAAT
GCATGCTATCTTTGGATGCTGTGACACTGAGAAAATCCAGCAAAGAAGAG
TTGAAGGAAGTCATTGTGTCCCTCATGTATTGGGCACAGACAATTGCAAG
ATCACTCTTATCACGCTTTCTTTACCTTATATGTAACCGAAGGGGACCCT
ATGAATATTATCATAGCTGGTTATCACACTGTCTCACCGTACCTTTTTTT
AAGTTTTATGTCTTTTTTTCCTCTTGCATGCCGTCCTGTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_g16.b1 MSMg01no318_g16.b1 CHROMAT_FILE:
MSMg01no318_g16.b1 PHD_FILE: MSMg01no318_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:35 2005
         (373 letters)



>mm_chr7_48319933_48320706
          Length = 774

 Score =  665 bits (344), Expect = 0.0
 Identities = 365/374 (97%), Gaps = 5/374 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccatacatttcctccca---tgctaaacacattcctacctgtgaaaatacactga 59
           |||||||||||||||||||  |   |||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccatacatttcctc--aaagtgctaaacacattcctacctgtgaaaatacactga 260

                                                                       
Query: 60  gatagggaaagagtttgtcttttactcacaaatatgctaaaatacccacattgctttttt 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagggaaagagtttttcttttactcacaaatatgctaaaatacccacattgctttttt 320

                                                                       
Query: 120 cgtataagacagcatcctgtaccagctaatacattctttgtttttccagctgttccactc 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catataagacagcatcctgtaccagctaatacattctttgtttttccagctgttccactc 380

                                                                       
Query: 180 actttctccttagatgggtctcagaaacaagcatggcacagaatgctcaaagcccaaaat 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctctccttagatgggtctcagaaacaagcatggcacagaatgctcaaagcccaaaat 440

                                                                       
Query: 240 actacagaacctgttgcaaggaggaggaagttacaataactgccacactcctttcacacg 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actacataacctgttgcaaggaggaggaagttacaataactgccacactcctttcacacg 500

                                                                       
Query: 300 gggacaaagacagaaggcagccagactaggtagtgtacaatcatgatactaaaaacaagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggacaaagacagaaggcagccagactaggtagtgtacaatcatgatactaaaaacaagg 560

                         
Query: 360 agctggagacaaaa 373
           ||||||||||||||
Sbjct: 561 agctggagacaaaa 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space:   278460
Effective search space used:   278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)