BAC Information

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BAC

Clone NameMSMg01-319M13
Chromosome7 (Build37)
Map Location 123,967,272 - 123,967,582
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993
Downstream geneLOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M13.T7 (MSMg01no319_m13.b1)MSMg01-319M13.TJ (MSMg01no319_m13.g1)
ACCAG439206AG439207
length746779
length of high quality
(start - end)
249 (123 - 371)311 (70 - 380)
definitionCHROMAT_FILE: MSMg01no319_m13.b1 PHD_FILE: MSMg01no319_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:10 2005CHROMAT_FILE: MSMg01no319_m13.g1 PHD_FILE: MSMg01no319_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTTAATTTCCGCCAATTTTTAAAAAAGGAAGACAATCACCTAATAGAGTT
TGTATTGCTGTGTCGACCAAAAGCAACTTGGGGAGGAGAGGGTTTATTTG
GGTCCCACTTCCACAGCACACTTTATCATTAAAGAAATCCAGGACACAAA
CCCTAGGCAGGAACCTGGAGATAGAAACTGAAGCAGAGGCCGTGGAGAAG
TGCCACTTATTGGCTTGCTCAGCTTGACTTCTTATACAGCTCAGGTCCAC
CTGCCCATGGTTGGCTTCTCTCAGTGGGCTGGCCCCTCTCACATAAATTA
TTAATTTATATTATACCTCATACATCCGCAGGCAATTGGATGGAAGCATT
TTCTGATTTGCCCCCCACCCCCCAAGATAAATCTAGCCTTTGACAAGTTG
ACAGAAAACCACTGGAAACTCCTGACCACTTTGATGAACCTTCAGGCGGG
CTCTTCGTACCCACTCCTCCCGGATATTCTAGGGTCTCACGTTTCTTCCT
TCCAGGTTTCCTGTTGTGACTGTGCCAGTTTAAAGATGACTATTGATACC
TGGATACTTTAGTGCTAATAAAGCATATTTCTTTCTCCATCTTTTCCTTT
TGTTTCTGATTGTTGATATTACTATGCCTGTGTATTGTTTCGCGTCCTCA
TTGTTTTTTAGTTCTCTATTGCCCTTAGTATTATTTTTTCCTGGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAGCACTAACTCTGTTACAGCACTTTAGG
CAGCCTGCCAGCTCAACACTATGTTAATCGCTATTTCATTTCTAGGCATT
CGGCTTAGGCGGAATCAGCTTAGGCCCAGAGATTTCCTGATACATCCTGA
TAAGGTAGGTTTCAGGTAGCACAGTCCTTCCAGGCTGCTGTTAAACAAAA
AGGTGGGGAGAGGAGGTTGAACAGAGTTGGAGTAGCCAGCAATTGATGCA
AGGCATGAAATTATGTTCATAAAGGTTGTAATGAGATGATATTTTGTCCA
CAACAGTTTTCACTGTTAAACCCCGCTTAGCCTTAAAGAGTAGAATGTTT
TGAAACTTTCCCCCCTCCTCTCCCTTATTCCTTATAATAAAGGCATCTAA
GAAGATAGATAGATAGATAGACAGATAGATAGATAGATAGATAGATAGAT
AGACTCCTTTGTCCTATCTTCTTGTGTTCTTCCTCACTCTATTACATTAT
TTTTTTATTCCTATTCTTCTCTCTTTATATTTACTTCTTTTTCCCTACCT
CCTTTTCCTATTTCTTTATTCCTGCGTTTGTTCTTATTCCTTTCACTTTT
TTTTCCCCCTCCTCCTCGTTTTTTTATATCTGGCCCTTCTTATTTTCTAT
TCATCTCGTCTCTTCTCTCTTATTTAACTCTTTCTCTCTTTTTCCATCTT
CCTCCTTCTTCTTTTTTTATTCCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m13.g1 MSMg01no319_m13.g1 CHROMAT_FILE:
MSMg01no319_m13.g1 PHD_FILE: MSMg01no319_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:10 2005
         (311 letters)



>mm_chr7_123967072_123967782
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagcactaactctgttacagcactttaggcagcctgccagctcaacactatgttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 catagcactaactctgttacagcactttaggcagcctgccagctcaacactatgttaatc 452

                                                                       
Query: 61  gctatttcatttctaggcattcggcttaggcggaatcagcttaggcccagagatttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gctatttcatttctaggcattcggcttaggcggaatcagcttaggcccagagatttcctg 392

                                                                       
Query: 121 atacatcctgataaggtaggtttcaggtagcacagtccttccaggctgctgttaaacaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atacttcctgataaggtaggtttcaggtagcacagtccttccaggctgctgttaaacaaa 332

                                                                       
Query: 181 aaggtggggagaggaggttgaacagagttggagtagccagcaattgatgcaaggcatgaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatgtggggagaggaggttgaacagagttggagtagccagcaattgatgcaaggcatgaa 272

                                                                       
Query: 241 attatgttcataaaggttgtaatgagatgatattttgtccacaacagttttcactgttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 attatgttcataaaggttgtaatgagatgatattttgtccacaacagttttcactgttaa 212

                      
Query: 301 accccgcttag 311
           |||||||||||
Sbjct: 211 accccgcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)