BAC Information

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BAC

Clone NameMSMg01-320G20
Chromosome7 (Build37)
Map Location 3,520,105 - 3,520,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109
Downstream geneOscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G20.T7 (MSMg01no320_g20.b1)MSMg01-320G20.TJ (MSMg01no320_g20.g1)
ACCAG439662AG439663
length709710
length of high quality
(start - end)
278 (432 - 709)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no320_g20.b1 PHD_FILE: MSMg01no320_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005CHROMAT_FILE: MSMg01no320_g20.g1 PHD_FILE: MSMg01no320_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGAAGACCAAGATGGCCTGGAGCTCACGCAGAGATTCATCT
GTTGCTGCCTCCTGTGAGCCGGGATCATATGTGTGAGCCACAGCATCTAG
CTAAAAATGAAGACTTTTTCCCCTTCCTTTAAGTCTCAGATAAAACTAAG
GTATTAAGGTTGAGATGATTGCTCAGTAGTTAGAGTATTTGCTGTGGAAA
AAGAGTTTCCTGAAAACAAAGAAACAACCCAAGAAGATCAACTATTTGGG
GGTTGTAGAAGAAAAGCATCAGATCCCCCTAACCCAGACACTAGGTTGTT
GCAAATATATACTTTAACCCCTCGCCCCTCAAAACCAGCCTAAGGACGCA
GCTAACCTCATATGTGTGCATGAATATTGAGACTGGACATTGATATGGTC
AGAATCCTCCTCAATTGTTCTTCTATCTTATTCATCAAGGCAGGCTCTCA
CAATCACATCATAGCTCTTGGACACGGTTACTCTCACCAGCTGGCTTACC
TGAAAGTACGCCCTGCCTCTGCCTTCTAAAGCTGGACTTACAGGTGGATT
ACCACGCTCACTCACCAATTTTATGGCTGCCCTATGGATTCTGTCTTCCC
GCTTCACTAACACTAGCGATTAAAACCTCAGCTGAAAGCATGGAATCTAT
GTTCTTTTG
CCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTCATAGCACAGGAAAGAGTA
GAACCTTTTCCTCTCCTTGGACGCAAGGGCCCTGGTTGGATGCTTAGTTA
GGAAACTTCGACCATCCCTAACTTCTGTAACTTCTGTATCTAACTCCACA
GCCACAGAGAACCAGGATCACACAACGGAGAATCTCATCAGGATGGGGAT
GGCAGTCGTGGTCCTCATCGTCCTTTCGATTCTAGCCACTGAGGCTTGGC
GAAGCCATAGACAGACCCACTATGCAGCTGGGAACTACTCTGAGGAGAGA
AGAATGTTNCTTCAACGTCNTACCCTNTCCCAAATAAAGATGATGACCCA
AAGTTGTCNNAAAAAAACGAAAAAAAAAAAAAAACACTGTTGTGGTATTG
AGGAACTGCTGTGATAGAATGTCTGGGGAGCAAAAGTTTGGGGTTCATAG
GGAAGTGGAATTTGATAATGAGGTGCTTCACCAACAAGTGAATTACTGTC
CCTCCACGTACTCGGAGCCTTTGTTTCCTGAACCGACACTCTTCTGAACC
CAGAAAGTGAGGGAATAGGCTGTCCCACCTGCCTGGAATATCTTTCACCT
GTGGATTGCATTTTTCTGTATTTCTTTATGGGGTTTATTCATTCACATTT
AAAGGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g20.b1 MSMg01no320_g20.b1 CHROMAT_FILE:
MSMg01no320_g20.b1 PHD_FILE: MSMg01no320_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (278 letters)



>mm_chr7_3519904_3520581
          Length = 678

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctggacattgatatggtcagaatcctcctcaattgttcttctatcttattcatcaaggca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctggacattgatatggtcagaatcctcctcaattgttcttctatcttattcatcaaggca 261

                                                                       
Query: 62  ggctctcacaatcacatcatagctcttggacacggttactctcaccagctggcttacctg 121
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 262 ggctctcacaatcacatcatagctcttggacatggttactctcaccagctggcttacctg 321

                                                                       
Query: 122 aaagtacgccctgcctctgccttctaaagctggacttacaggtggattaccacgctcact 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagtacgccctgcctctgccttctaaagctggacttacaggtggattaccacgctcact 381

                                                                       
Query: 182 caccaattttatggctgccctatggattctgtcttcccgcttcactaacactagcgatta 241
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 382 caccaattttatggctgccctatgaattctgtcttcccgcttcactaccactagcgatta 441

                                                
Query: 242 aaacctcagctgaaagcatggaatctatgttcttttg 278
           |||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaacctcagctgaaagcatggaatctatgttcttttg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)