BAC Information

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BAC

Clone NameMSMg01-320K21
Chromosome7 (Build37)
Map Location 84,684,139 - 84,684,365
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K21.T7 (MSMg01no320_k21.b1)MSMg01-320K21.TJ (MSMg01no320_k21.g1)
ACCAG439851AG439852
length703595
length of high quality
(start - end)
319 (46 - 364)235 (61 - 295)
definitionCHROMAT_FILE: MSMg01no320_k21.b1 PHD_FILE: MSMg01no320_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:14 2005CHROMAT_FILE: MSMg01no320_k21.g1 PHD_FILE: MSMg01no320_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTCTATCTCTGTACCCCATTTTTAAATTGGATTATTTGGTTT
GTTGGAGTCTAACTTCTTTAGTCCCTTATATATTTTGAATATTAGCCCTC
TGTCAGATGTAGCGTTACTGAAGATCTTTCCCAATCTTTAGGCAGCCGTT
TTGTCCTATTGATAGTATCCTTTGCCTTAAAGAAGCTTTGTAGTTTCATG
AGGTCCCATTTATCAATTGTTGATCTTAGAGCCTGAGACATTGGTGTTCC
GTTCAGGAAGTTGTTACCTGTACCAATTCATTCAAGGATACTTCCCACTT
CCACTTTTACGAGGTTTATTGTGTCCAGCTTTATGTAGAGGTGCTTTATC
CACTTGGATTTGAGGTTTGTGCAGGGTGCCAAATATGGATCTATTTGCAT
TCTTCTACAAGCACACATCCTGTTAGATAAGAATCATTTGTTGAAGATGC
TTTCTTTTGTCCTTTGTATAGTTTTGGGGTTTTGTTGTTGTTGTTGCTGT
TGTTGTTGTTGAAAATCAAGTGTCCATAAGTGTGTGGGTTTATTTAGTGA
TCTTTAGTTCAGTTTTAATGATCAACCTGTCTGATTCTGTACTAACACCA
TGCAATGTTTGTCACTATTGCTCTGCGGGACAGCTTTATCTCATTAATTG
GGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAATCCTTAATTTTGAAGCAGAGGAGTGTGAAGTTATTACA
CCATGATCCTCCCATCAGTTTTGATCGATGGATCAATTAGGCCTCAGGCA
TCCAGTGTATTATTTGCCCTGCACAGTGGTCCTTGAACAGCATGGTCACT
TCATGAGCATGAGACATCCTCCTTTTCCCCATCTCCTCTCCGTATCTCCT
CCCCCTGTGCCTCTGTCAGAAGAATTTGCATCCTCTGCTCTCTCCCTGTT
GATAAGGCTCATCAAGGAAAGTAATGCTAAACTCCACAGGAGGGAATTTT
TGAGGTATATTTTTTTGACTTCCCCCGGCGCCCCATCTTTTAACACCCCC
CTAAATATCCNTTAAAAAAAATGCCACCTTTTTTTTAAAGTGGGCTTTCC
CCGAAAAAAACTTGGGGGGGGGGGGCCCTTTTATGGGGAATAAATCCCCC
CCAATTGGGGTTGGGGGGGTTTTAATATATTTTAACAAAAAAGGTAATGG
GTGTGCCATTCAAAAACCCTCTTGGGAAAAAAAAATTATTTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k21.g1 MSMg01no320_k21.g1 CHROMAT_FILE:
MSMg01no320_k21.g1 PHD_FILE: MSMg01no320_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:14 2005
         (235 letters)



>mm_chr7_84683931_84684565
          Length = 635

 Score =  400 bits (207), Expect = e-116
 Identities = 222/227 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   attttgaagcagaggagtgtgaagttattacaccatgatcctcccatcagttttgatcga 68
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 209 attttgaagcagaggagtgtgaagttattacaccatgatcctgacatcagttttgatcga 268

                                                                       
Query: 69  tggatcaattaggcctcaggcatccagtgtattatttgccctgcacagtggtccttgaac 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggatcaattaggcctcaggcatccagtgtattatttgccctgcacagtggtccttgaac 328

                                                                       
Query: 129 agcatggtcacttcatgagcatgagacatcctccttttccccatctcctctccgtatctc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcatggtcacttcatgagcatgagacatcctccttttccccatctcctctccgtatctc 388

                                                          
Query: 189 ctccccctgtgcctctgtcagaagaatttgcatcctctgctctctcc 235
           ||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 389 ctccccctgtgcctctgtcaggataatctgcatcctctgctctctcc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)