BAC Information

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BAC

Clone NameMSMg01-321D08
Chromosome7 (Build37)
Map Location 107,636,632 - 107,636,876
singlet/doubletsinglet
Overlap genenone
Upstream geneArrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3
Downstream geneUcp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321D08.T7 (MSMg01no321_d08.b1)MSMg01-321D08.TJ (MSMg01no321_d08.g1)
ACCAG440240AG440241
length744742
length of high quality
(start - end)
252 (46 - 297)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no321_d08.b1 PHD_FILE: MSMg01no321_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:54 2005CHROMAT_FILE: MSMg01no321_d08.g1 PHD_FILE: MSMg01no321_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCCCAGAGTTTATCTTAAAAAGGTGTTCCTCTCTCCCTGGGGAAAGT
CTGCTTTTGCTTTTTATTATTTATTTGTTTGTTTTTGAGCCGGTTTTGCT
CTATAGCCCAGGCTGATCTTCCTGCCTCAGCTACCCAACTGGTTACATTA
CAGGCATGCCCACAACCTGTTAGCTCACCTTTTATTAACTTCTTGGAGCC
AGTCATTGTCCAGGGACACATACCAAATCTGGCTGTATTTAAATTCAGCA
TTGGTGCTGGGTAGTGGTGGTGTTTGCCTTTAATCCAAGAACTCGGTAGA
TAGAGGCAGACGGTATCTCTGAGCTTGACGCTAGCTTGGTCTTCAGAGTG
AGTTCCAAGACAGACAGGCCCCCACCCATAAACCCTGTCTGTATAATATC
AAAGTACAGACCCAACCAACCATCCAAACAGACTAACTTATTCAGTATCT
GGATCTGTGGTTTTGGTTTTCCCAGCTTCCTTCTTTTCCCTGTCTTTGCA
TCCTTCTTTATTAGGCTGATGTATAATCTTTTCATTGAATTTTGTACTGT
TGTTGTAAAATCTTCCCATTTCTTCTGGTTGCTTAATCCGTAGAGTGTAA
TCCTGGGACACGTTTTGACCGCCCCTTCCTCATCCCTCTGATCAATATGC
TTTATTTGTCCATCTAAAGTCTGGCACCATTGAATATCCATTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGAAATTCCAACTGACGCTTGAGGTCGTCTTCCCAT
ACAAAAGAGATAGTTAGACAACAGCAAAATAAATTATCTTGGTTTAATGT
CCCTCACGGCCTTCCACCCAAAAACCTGTATTTAGAAGATCGTCTTTCTT
TGGACTTCACCAACATATGCAAATCACTCAAACTCCTGGTCTCTCTTCCC
AAAGTTCCTGGGGCCAGAAACTATCCTCTATATTAATTTCTATGTTATTA
GAAGGGGAGACGATGCATATTTTATAAGAGGAGGAGGTGGTACGAACGGG
GAGCAAGAGGATTTTTTATCTGCCACCCTGCCACAAGATGAAAAAAGAAT
ATCTGGTAGGTTGTATTTCCCCCCCCCGCAACTTTTTGACACAGTCTGAT
GTAGTCCAGACTGGCCTGAATTGACTATGTAGCAGACGATGTCCTTGAAC
TACTGATCTTCCTGCCTCTGCCCCTCCAACTACTGAGATTGCCTGAGTGT
GTCACTGATCCTGCTTCTGAATGATTTGGATGGATGAGGATGCTGTCATT
TGTGTATTTATTCTTTCATATAATGGAATACTGATGAATTGTTCGACGTT
CCTTGGTTTGGACGTCAGTCTTCTCTCCCGAGTTCTTCCTCTTGCTGTTC
TGTACCTAAAATCTATTTCGTTTACTTCGCCTTCCTCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_d08.g1 MSMg01no321_d08.g1 CHROMAT_FILE:
MSMg01no321_d08.g1 PHD_FILE: MSMg01no321_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:54 2005
         (248 letters)



>mm_chr7_107636432_107637079
          Length = 648

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactgacgcttgaggtcgtcttcccatacaaaagagatagttagacaacagcaaaataa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 201 caactgacgcttgaggtcgtcttcccatacaaaatagatagttagacaaaagcaaaataa 260

                                                                       
Query: 61  attatcttggtttaatgtccctcacggccttccacccaaaaacctgtatttagaagatcg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 261 attatcttggtttaatgtccctcaaggccttccacccaaaaacctgtatttagaagatca 320

                                                                       
Query: 121 tctttctttggacttcaccaacatatgcaaatcactcaaactcctggtctctcttcccaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tctttctttggacttcaccaacatatgcaagtcactcaaactcctggtctctcttcccaa 380

                                                                       
Query: 181 agttcctggggccagaaactatcctctatattaatttctatgttattagaaggggagacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agttcctggggccagaaactatcctctatattaatttctatgttattagaaggggagact 440

                
Query: 241 atgca 245
           |||||
Sbjct: 441 atgca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)