BAC Information

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BAC

Clone NameMSMg01-321K06
Chromosome7 (Build37)
Map Location 55,187,484 - 55,187,777
singlet/doubletsinglet
Overlap genenone
Upstream geneUevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978
Downstream geneMrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321K06.T7 (MSMg01no321_k06.b1)MSMg01-321K06.TJ (MSMg01no321_k06.g1)
ACCAG440557AG440558
length739738
length of high quality
(start - end)
290 (72 - 361)575 (73 - 647)
definitionCHROMAT_FILE: MSMg01no321_k06.b1 PHD_FILE: MSMg01no321_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:26 2005CHROMAT_FILE: MSMg01no321_k06.g1 PHD_FILE: MSMg01no321_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTTTTTCCGAAATAAGAGTTTTTCTCAGGTTTCTTCCCTACCG
ACTTACATTGTATGTCCCAGTCGCCTGCTGGTAAATAACTAAGTAGGCAA
ATGAATGTTTTAGTAAAAGCCGTTATCACAGAGAAATGTTTAGTAAGAAA
AATCATCTCCACGAATAAAAGTTTGCAAATCTCTTATTAAAACGAATACT
TTTTAAAATTTTCTACCAAGTTCTCTTTAAATCTAACTAATGGCCTGGCT
GGGCATCACTGTTTCCTGTGACATTCAGTTGCTGTGATTGTGTGCCTTAT
TTAAGGCATGTGTTTTTTTTATCGCCCCCCCCCCCAGCTTTTCACAGAAA
GCAAGGTACTATAAAAACACCGCCAAATGAATTTTATTACAGCTTACCCA
ATTTAATACCAAACATGTCAGTGACACACAGTTGCTAAGACACCATCAGC
AGTCAAGTACAAAAAGACTCAGAGGGTAATTTTCTGTGATTTAGCTTAAA
GATGAATTTTTCACGCATCTCAATTTGGGGTTACTCAACAGGTCTTTGCA
TACTAGGAAACACTTTAGGAAAAGCTGTGTAACTGACAAAATCACAAACA
TCTAAGTTTGTAATAATCTGAGCCACCCATGGCATCATATCATGACACTC
TGACTGTGCTTGAACTTATGGCATTGTTATAGAATTTCC
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGGGAATGAAGAGAAA
TAGAAAATATCATTCTGAGTGAGGTAACCCAATCACAAAAGAACACACAT
GGTATTCACTCACTGATAAGTGGATACTAGCCTAAAAGCTGCAAATAACC
AGGATAAAATTCACAGACCACATGAATCTCAATAAGAAGGAAGAAGAAAG
TGTGGGTGTTTCGGTCCTTCTTAGAAGGAGAACAAAATACTCACAAGAGC
AAATATGGAGATAAAGTGTATAACAGACACTAGAGGAAAAGTCACCCAGA
GAATGTTCCACCTGAGGATTCATCCAAAATACATTTACCAAACCCAGACA
CTATTGTGGATGCCCAGGAGTGAATGCTGACAGGAACCTGATATAGCTGT
TTCCTAAGAGGCCATGCCAGAGCCTTACAAATACAGAGGCAGATGTTAGC
AGCCAGCAATTAGACTGAGCACAGGGTCCCTAATAGTGGAGTTAGAGAAA
GGACTGAGGGAAATGAACTGGTTTGCAGCCCCATAAGAACAAAAATATGA
ACCAACAAGACACTACCCCCTGAAACCCCCGAACTCCCAGGGACTAAGCC
ATCAACTACAGAGTACACATGGCTCTAGGTGCATATGTAGCAGAGGATGG
CCATGTCATGCATAGATGGAAGAAGAGGTCCTTCGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_k06.b1 MSMg01no321_k06.b1 CHROMAT_FILE:
MSMg01no321_k06.b1 PHD_FILE: MSMg01no321_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:26 2005
         (290 letters)



>mm_chr7_55187288_55187977
          Length = 690

 Score =  265 bits (137), Expect = 2e-75
 Identities = 256/301 (85%), Gaps = 18/301 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtttttctcaggtttcttccctaccgacttacattgtatgtcccagtcgcctgctgg 60
           |||||||| ||||||| | ||||||||||||||||||||||||||||||| |  | ||||
Sbjct: 197 agagttttcctcaggtctgttccctaccgacttacattgtatgtcccagt-ggttactgg 255

                                                                       
Query: 61  taaataacta-agtaggcaaatgaatgttttagtaaaagccgttatcacagagaaatgtt 119
           |||||||||| | ||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct: 256 taaataactata-taggcaattgaatgttttagtaaaagcagttatcacagagtaatatt 314

                                                                       
Query: 120 tagtaagaaaaatcatctccacgaataaaag--tttgcaaatctcttatt-----aaaac 172
           ||||||| |||||||||||||  ||||||||  ||||   || |||||||     |||| 
Sbjct: 315 tagtaaggaaaatcatctccataaataaaagtttttg---at-tcttatttaaaaaaaaa 370

                                                                       
Query: 173 gaa--tactttttaaaattttctaccaagttctctttaaatctaactaatggcctggctg 230
           |||  || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 371 gaatgtaatttttaaaattctctaccaagttctctttaaatctaactaatgtcctggctg 430

                                                                       
Query: 231 ggcatcac-tgtttcctgtgacattcagttgctgtgattgtgtgccttatttaaggcatg 289
            | ||||| | || |||||||| ||||| |||||| ||| ||||||| ||| |||| |||
Sbjct: 431 tgtatcacctctt-cctgtgactttcagatgctgttattctgtgcctcattgaaggaatg 489

            
Query: 290 t 290
           |
Sbjct: 490 t 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)